Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 2726 | 0.66 | 0.657087 |
Target: 5'- gGCCGGaCG-CUUgAGCGCG-GCccggCGCu -3' miRNA: 3'- -UGGCC-GCuGAAgUUGCGCuCGua--GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 30685 | 0.66 | 0.650377 |
Target: 5'- --aGGCGGCgggaauugucggugUUGugGCGGGCAUgGCu -3' miRNA: 3'- uggCCGCUGa-------------AGUugCGCUCGUAgCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 14588 | 0.66 | 0.6459 |
Target: 5'- uGCCGGCGGCcgauccgcuuUUCAGCa-GuGCGUCGg -3' miRNA: 3'- -UGGCCGCUG----------AAGUUGcgCuCGUAGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 13569 | 0.67 | 0.634699 |
Target: 5'- -aCGGCGAUgUUgAACGCGcGC-UCGCc -3' miRNA: 3'- ugGCCGCUG-AAgUUGCGCuCGuAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 7240 | 0.67 | 0.634699 |
Target: 5'- uUCGGCcACU--GGCGCGGGCcgauGUCGCc -3' miRNA: 3'- uGGCCGcUGAagUUGCGCUCG----UAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 37657 | 0.67 | 0.634699 |
Target: 5'- aACCucGCaGACgugCAGaccguCGCGGGCAUCGCu -3' miRNA: 3'- -UGGc-CG-CUGaa-GUU-----GCGCUCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 19859 | 0.67 | 0.623496 |
Target: 5'- aGCgUGGUGAgUUCgGGCGUGccgaaGGCGUCGCg -3' miRNA: 3'- -UG-GCCGCUgAAG-UUGCGC-----UCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 29203 | 0.67 | 0.623496 |
Target: 5'- gACCGGCagg-UCgGACGCGcGCAUgGCg -3' miRNA: 3'- -UGGCCGcugaAG-UUGCGCuCGUAgCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 14891 | 0.67 | 0.623496 |
Target: 5'- gACCGGCGGCgagCcGCuGCcGGCG-CGCg -3' miRNA: 3'- -UGGCCGCUGaa-GuUG-CGcUCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 7433 | 0.67 | 0.623496 |
Target: 5'- gGCCGGCcagcaguucGGCUUCGgccuucGCGCGAaugGCcUUGCa -3' miRNA: 3'- -UGGCCG---------CUGAAGU------UGCGCU---CGuAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 12613 | 0.67 | 0.623496 |
Target: 5'- cGCaUGGCGc---CGACGCGcucGGCAUCGCu -3' miRNA: 3'- -UG-GCCGCugaaGUUGCGC---UCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 30965 | 0.67 | 0.622376 |
Target: 5'- aGCUGGCGgacuACUUCGGCGUGAcgguggacgaucuGCucacgCGCg -3' miRNA: 3'- -UGGCCGC----UGAAGUUGCGCU-------------CGua---GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 12139 | 0.67 | 0.620136 |
Target: 5'- gACCGGCGcccccuggcaACUgauUCAGgGCGAGgcccugcccgcgcuCAUCGCc -3' miRNA: 3'- -UGGCCGC----------UGA---AGUUgCGCUC--------------GUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 18691 | 0.67 | 0.612301 |
Target: 5'- uGCCGGC-AUggaAGcCGCGGGCGUgGCg -3' miRNA: 3'- -UGGCCGcUGaagUU-GCGCUCGUAgCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 23910 | 0.67 | 0.612301 |
Target: 5'- cGCCcGCGGCUUCcAUGCcGGCAUagGCg -3' miRNA: 3'- -UGGcCGCUGAAGuUGCGcUCGUAg-CG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 25843 | 0.67 | 0.601124 |
Target: 5'- cGCCGGUGGCU---ACGCccacGAGCGUgacCGCc -3' miRNA: 3'- -UGGCCGCUGAaguUGCG----CUCGUA---GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 36219 | 0.67 | 0.601124 |
Target: 5'- gGCCGGCcugcgccuGAUUgcCGACGUGGGCcgguUCGCc -3' miRNA: 3'- -UGGCCG--------CUGAa-GUUGCGCUCGu---AGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 28402 | 0.67 | 0.601124 |
Target: 5'- cGCCGGCGGCg-CGGCGCcAGUAgauGCc -3' miRNA: 3'- -UGGCCGCUGaaGUUGCGcUCGUag-CG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 30167 | 0.67 | 0.601124 |
Target: 5'- gUCGGCGACaUCGACaGCGccaccaaggacGGCAUCa- -3' miRNA: 3'- uGGCCGCUGaAGUUG-CGC-----------UCGUAGcg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 11587 | 0.67 | 0.601124 |
Target: 5'- gGCCGGCaagcccgugGACaggUCGcGCGUGAGCAgaUCGUc -3' miRNA: 3'- -UGGCCG---------CUGa--AGU-UGCGCUCGU--AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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