miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 10285 0.66 0.701485
Target:  5'- cGCCGGCcuuGAUggCGGCGaUGAG-GUCGCg -3'
miRNA:   3'- -UGGCCG---CUGaaGUUGC-GCUCgUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 10865 0.68 0.567794
Target:  5'- cCUGcGUGGCUUCGgucgGCGCGAuGCG-CGCg -3'
miRNA:   3'- uGGC-CGCUGAAGU----UGCGCU-CGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 11587 0.67 0.601124
Target:  5'- gGCCGGCaagcccgugGACaggUCGcGCGUGAGCAgaUCGUc -3'
miRNA:   3'- -UGGCCG---------CUGa--AGU-UGCGCUCGU--AGCG- -5'
26672 3' -54.8 NC_005808.1 + 12139 0.67 0.620136
Target:  5'- gACCGGCGcccccuggcaACUgauUCAGgGCGAGgcccugcccgcgcuCAUCGCc -3'
miRNA:   3'- -UGGCCGC----------UGA---AGUUgCGCUC--------------GUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 12329 0.71 0.40268
Target:  5'- uCCGGCGACUc--GCGCGAcCAgCGCa -3'
miRNA:   3'- uGGCCGCUGAaguUGCGCUcGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 12472 0.75 0.225681
Target:  5'- gGCCGGCGGCgugUUcuGGCGCGGccuCAUCGCc -3'
miRNA:   3'- -UGGCCGCUGa--AG--UUGCGCUc--GUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 12613 0.67 0.623496
Target:  5'- cGCaUGGCGc---CGACGCGcucGGCAUCGCu -3'
miRNA:   3'- -UG-GCCGCugaaGUUGCGC---UCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 13569 0.67 0.634699
Target:  5'- -aCGGCGAUgUUgAACGCGcGC-UCGCc -3'
miRNA:   3'- ugGCCGCUG-AAgUUGCGCuCGuAGCG- -5'
26672 3' -54.8 NC_005808.1 + 14026 0.7 0.421701
Target:  5'- uGCCGGUGGC--CGACGUGcGCGcCGCg -3'
miRNA:   3'- -UGGCCGCUGaaGUUGCGCuCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 14588 0.66 0.6459
Target:  5'- uGCCGGCGGCcgauccgcuuUUCAGCa-GuGCGUCGg -3'
miRNA:   3'- -UGGCCGCUG----------AAGUUGcgCuCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 14771 0.72 0.316146
Target:  5'- gGCCGGCGc---CAcCGCGGGCAgcgCGCg -3'
miRNA:   3'- -UGGCCGCugaaGUuGCGCUCGUa--GCG- -5'
26672 3' -54.8 NC_005808.1 + 14891 0.67 0.623496
Target:  5'- gACCGGCGGCgagCcGCuGCcGGCG-CGCg -3'
miRNA:   3'- -UGGCCGCUGaa-GuUG-CGcUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 15455 0.66 0.668251
Target:  5'- gUgGGgGACUUCGagugauGCGCGcGGCGUCaGCu -3'
miRNA:   3'- uGgCCgCUGAAGU------UGCGC-UCGUAG-CG- -5'
26672 3' -54.8 NC_005808.1 + 16346 0.68 0.545829
Target:  5'- gGCCGGCGGgugcccgugcCUUCGgcgACGCGcGCAaaacugCGCg -3'
miRNA:   3'- -UGGCCGCU----------GAAGU---UGCGCuCGUa-----GCG- -5'
26672 3' -54.8 NC_005808.1 + 16439 0.72 0.316146
Target:  5'- cGCCGGCGGCgUUgAACaCG-GCGUCGUa -3'
miRNA:   3'- -UGGCCGCUG-AAgUUGcGCuCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 16773 0.72 0.340562
Target:  5'- cACCGGCGACgUgAAgGCGAugGUCGCc -3'
miRNA:   3'- -UGGCCGCUGaAgUUgCGCUcgUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 16791 0.66 0.694878
Target:  5'- cCCGGUGcAgaUCAAcgauaccgagcgcgcCGCGcGCAUCGCg -3'
miRNA:   3'- uGGCCGC-UgaAGUU---------------GCGCuCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 17074 0.7 0.46131
Target:  5'- uGCCGGCGGCggCAAaacCGAccuCAUCGCg -3'
miRNA:   3'- -UGGCCGCUGaaGUUgc-GCUc--GUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 17292 0.66 0.690461
Target:  5'- aGCCGGCGc------CGCGGGCG-CGCa -3'
miRNA:   3'- -UGGCCGCugaaguuGCGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 17306 0.67 0.587748
Target:  5'- gGCCGGCcgcacgaccucaaGGCaUUCGACGaagugacCGAGCAgCGCg -3'
miRNA:   3'- -UGGCCG-------------CUG-AAGUUGC-------GCUCGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.