miRNA display CGI


Results 21 - 40 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 19045 0.71 0.37519
Target:  5'- uGCCGGCGAUgUCGGC-CGAGgcCAUCGa -3'
miRNA:   3'- -UGGCCGCUGaAGUUGcGCUC--GUAGCg -5'
26672 3' -54.8 NC_005808.1 + 38165 0.71 0.393375
Target:  5'- cGCUGGCGGCUUCccccuGGCGCG-GCA-CGa -3'
miRNA:   3'- -UGGCCGCUGAAG-----UUGCGCuCGUaGCg -5'
26672 3' -54.8 NC_005808.1 + 12329 0.71 0.40268
Target:  5'- uCCGGCGACUc--GCGCGAcCAgCGCa -3'
miRNA:   3'- uGGCCGCUGAaguUGCGCUcGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 27500 0.71 0.40268
Target:  5'- uGCCGGCGGCcUCGGcCGCcAGCuucucggCGCg -3'
miRNA:   3'- -UGGCCGCUGaAGUU-GCGcUCGua-----GCG- -5'
26672 3' -54.8 NC_005808.1 + 9735 0.71 0.40268
Target:  5'- cGCgGGCGaACUgcUCGugGUGGGCG-CGCu -3'
miRNA:   3'- -UGgCCGC-UGA--AGUugCGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 21831 0.7 0.412122
Target:  5'- aGCCGcGCGAUgagUCgAGCGCGGcGCAgCGCc -3'
miRNA:   3'- -UGGC-CGCUGa--AG-UUGCGCU-CGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 37086 0.7 0.412122
Target:  5'- gGCCGGCGugUccuaCGACuuugGC-AGCAUCGCc -3'
miRNA:   3'- -UGGCCGCugAa---GUUG----CGcUCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 14026 0.7 0.421701
Target:  5'- uGCCGGUGGC--CGACGUGcGCGcCGCg -3'
miRNA:   3'- -UGGCCGCUGaaGUUGCGCuCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 4178 0.7 0.421701
Target:  5'- aGCCGGCcGCcUCgAugGCGGGCAUguuggcCGCg -3'
miRNA:   3'- -UGGCCGcUGaAG-UugCGCUCGUA------GCG- -5'
26672 3' -54.8 NC_005808.1 + 2255 0.7 0.42557
Target:  5'- gGCCGGC-AgUUCGACGCGcaccacguugacgauGGguUCGCu -3'
miRNA:   3'- -UGGCCGcUgAAGUUGCGC---------------UCguAGCG- -5'
26672 3' -54.8 NC_005808.1 + 35046 0.7 0.431413
Target:  5'- aGCCGGUGGCgccgCAGauCGAGCA-CGCc -3'
miRNA:   3'- -UGGCCGCUGaa--GUUgcGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 9316 0.7 0.431413
Target:  5'- gACCuGGCGGCgcacgUCGGCGCG-GCGg-GCg -3'
miRNA:   3'- -UGG-CCGCUGa----AGUUGCGCuCGUagCG- -5'
26672 3' -54.8 NC_005808.1 + 36052 0.7 0.441254
Target:  5'- cGCgGGCuGCUacgUCAACGCcAGCAUCGa -3'
miRNA:   3'- -UGgCCGcUGA---AGUUGCGcUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 26596 0.7 0.441254
Target:  5'- cACCGGCGACcugUCccUGCGcGCggCGCa -3'
miRNA:   3'- -UGGCCGCUGa--AGuuGCGCuCGuaGCG- -5'
26672 3' -54.8 NC_005808.1 + 35470 0.7 0.451221
Target:  5'- aGCCGaCGACUUCGcggACGUGAGCGgggaaacCGUg -3'
miRNA:   3'- -UGGCcGCUGAAGU---UGCGCUCGUa------GCG- -5'
26672 3' -54.8 NC_005808.1 + 9955 0.7 0.451221
Target:  5'- -gCGGCGccgaACUUCGAcaggacagcacCGCG-GCGUCGCg -3'
miRNA:   3'- ugGCCGC----UGAAGUU-----------GCGCuCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 38719 0.7 0.451221
Target:  5'- -gCGGCGACggCAGCGCGgccuacAGCGacggCGCc -3'
miRNA:   3'- ugGCCGCUGaaGUUGCGC------UCGUa---GCG- -5'
26672 3' -54.8 NC_005808.1 + 17074 0.7 0.46131
Target:  5'- uGCCGGCGGCggCAAaacCGAccuCAUCGCg -3'
miRNA:   3'- -UGGCCGCUGaaGUUgc-GCUc--GUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 32881 0.7 0.46131
Target:  5'- cGCCcGCGGCUUCGAgGCGuaucucuucgagGGCAagGCg -3'
miRNA:   3'- -UGGcCGCUGAAGUUgCGC------------UCGUagCG- -5'
26672 3' -54.8 NC_005808.1 + 30424 0.69 0.471517
Target:  5'- gGCaUGGCGAUg--AGCGCGGGCAgggccUCGCc -3'
miRNA:   3'- -UG-GCCGCUGaagUUGCGCUCGU-----AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.