miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 27638 1.11 0.000654
Target:  5'- gACCGGCGACUUCAACGCGAGCAUCGCc -3'
miRNA:   3'- -UGGCCGCUGAAGUUGCGCUCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 17805 0.96 0.007224
Target:  5'- -aCGGCGACUUCAACGCGGGCAUCGa -3'
miRNA:   3'- ugGCCGCUGAAGUUGCGCUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 8191 0.79 0.119225
Target:  5'- uGCCGGCGAUUUCAuCGCGcacGGCcUCGUa -3'
miRNA:   3'- -UGGCCGCUGAAGUuGCGC---UCGuAGCG- -5'
26672 3' -54.8 NC_005808.1 + 28669 0.75 0.219718
Target:  5'- uGCCGGCGGCcucgcCAGCGCG-GCG-CGCc -3'
miRNA:   3'- -UGGCCGCUGaa---GUUGCGCuCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 28758 0.75 0.219718
Target:  5'- aGCgCGGUGcGCUucUCGGCGCGcacGGCGUCGCg -3'
miRNA:   3'- -UG-GCCGC-UGA--AGUUGCGC---UCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 12472 0.75 0.225681
Target:  5'- gGCCGGCGGCgugUUcuGGCGCGGccuCAUCGCc -3'
miRNA:   3'- -UGGCCGCUGa--AG--UUGCGCUc--GUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 8650 0.75 0.23802
Target:  5'- cGCCGGC--CUUCAucGCGCGgucGGCAUUGCg -3'
miRNA:   3'- -UGGCCGcuGAAGU--UGCGC---UCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 30735 0.74 0.250918
Target:  5'- cAUgGGCGAUaUUGGCGCGGGguUCGCc -3'
miRNA:   3'- -UGgCCGCUGaAGUUGCGCUCguAGCG- -5'
26672 3' -54.8 NC_005808.1 + 18765 0.74 0.264387
Target:  5'- uGCCGGCGAUUUCuuccauCGUcAGCGUCGa -3'
miRNA:   3'- -UGGCCGCUGAAGuu----GCGcUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 27554 0.73 0.278437
Target:  5'- uGCCcGCa---UCAACGCGGGCAUCGCc -3'
miRNA:   3'- -UGGcCGcugaAGUUGCGCUCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 24182 0.73 0.300616
Target:  5'- uUCGGCGugUcCAugaGCGCGAGCA-CGUa -3'
miRNA:   3'- uGGCCGCugAaGU---UGCGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 14771 0.72 0.316146
Target:  5'- gGCCGGCGc---CAcCGCGGGCAgcgCGCg -3'
miRNA:   3'- -UGGCCGCugaaGUuGCGCUCGUa--GCG- -5'
26672 3' -54.8 NC_005808.1 + 16439 0.72 0.316146
Target:  5'- cGCCGGCGGCgUUgAACaCG-GCGUCGUa -3'
miRNA:   3'- -UGGCCGCUG-AAgUUGcGCuCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 25741 0.72 0.316146
Target:  5'- cACCGGCGGCagC-ACGCuGGGCG-CGCu -3'
miRNA:   3'- -UGGCCGCUGaaGuUGCG-CUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 19052 0.72 0.332274
Target:  5'- cGCCGGCGGCgucgaUCAGCGUGucC-UCGCc -3'
miRNA:   3'- -UGGCCGCUGa----AGUUGCGCucGuAGCG- -5'
26672 3' -54.8 NC_005808.1 + 36153 0.72 0.332274
Target:  5'- -aCGGCGACgcCuuCGCGGGCggugguGUCGCg -3'
miRNA:   3'- ugGCCGCUGaaGuuGCGCUCG------UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 16773 0.72 0.340562
Target:  5'- cACCGGCGACgUgAAgGCGAugGUCGCc -3'
miRNA:   3'- -UGGCCGCUGaAgUUgCGCUcgUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 34088 0.72 0.348998
Target:  5'- cGCCGGCGACaUCAa---GGGCAUCGa -3'
miRNA:   3'- -UGGCCGCUGaAGUugcgCUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 6972 0.72 0.356717
Target:  5'- cGCuCGGUGGCUuuccgauggcuuUCAcacGCGCGAGCGggucggcUCGCg -3'
miRNA:   3'- -UG-GCCGCUGA------------AGU---UGCGCUCGU-------AGCG- -5'
26672 3' -54.8 NC_005808.1 + 29890 0.72 0.361057
Target:  5'- gGCCgGGCGACUugaacagccaggcuaUCAAgGCGGGCcUCGa -3'
miRNA:   3'- -UGG-CCGCUGA---------------AGUUgCGCUCGuAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.