miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 1042 0.69 0.513426
Target:  5'- gGCCGGCGGCagcaugUCGcCGCGAaccgGCGUC-Ca -3'
miRNA:   3'- -UGGCCGCUGa-----AGUuGCGCU----CGUAGcG- -5'
26672 3' -54.8 NC_005808.1 + 1372 0.67 0.601124
Target:  5'- uCCGGCGACcgaAGCGCaAGUccUCGCg -3'
miRNA:   3'- uGGCCGCUGaagUUGCGcUCGu-AGCG- -5'
26672 3' -54.8 NC_005808.1 + 2255 0.7 0.42557
Target:  5'- gGCCGGC-AgUUCGACGCGcaccacguugacgauGGguUCGCu -3'
miRNA:   3'- -UGGCCGcUgAAGUUGCGC---------------UCguAGCG- -5'
26672 3' -54.8 NC_005808.1 + 2726 0.66 0.657087
Target:  5'- gGCCGGaCG-CUUgAGCGCG-GCccggCGCu -3'
miRNA:   3'- -UGGCC-GCuGAAgUUGCGCuCGua--GCG- -5'
26672 3' -54.8 NC_005808.1 + 4018 0.66 0.668251
Target:  5'- cGCCGGCcACcagcgUCAugccGCGCGGGUcgagCGCa -3'
miRNA:   3'- -UGGCCGcUGa----AGU----UGCGCUCGua--GCG- -5'
26672 3' -54.8 NC_005808.1 + 4178 0.7 0.421701
Target:  5'- aGCCGGCcGCcUCgAugGCGGGCAUguuggcCGCg -3'
miRNA:   3'- -UGGCCGcUGaAG-UugCGCUCGUA------GCG- -5'
26672 3' -54.8 NC_005808.1 + 4261 0.69 0.492266
Target:  5'- uGCCGGCcg--UCAGCGCcGGCAUgGUg -3'
miRNA:   3'- -UGGCCGcugaAGUUGCGcUCGUAgCG- -5'
26672 3' -54.8 NC_005808.1 + 5647 0.66 0.701485
Target:  5'- uGCUGGUGGCUg-GACGCGGuuuGCAgaacaGCa -3'
miRNA:   3'- -UGGCCGCUGAagUUGCGCU---CGUag---CG- -5'
26672 3' -54.8 NC_005808.1 + 6972 0.72 0.356717
Target:  5'- cGCuCGGUGGCUuuccgauggcuuUCAcacGCGCGAGCGggucggcUCGCg -3'
miRNA:   3'- -UG-GCCGCUGA------------AGU---UGCGCUCGU-------AGCG- -5'
26672 3' -54.8 NC_005808.1 + 7240 0.67 0.634699
Target:  5'- uUCGGCcACU--GGCGCGGGCcgauGUCGCc -3'
miRNA:   3'- uGGCCGcUGAagUUGCGCUCG----UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 7365 0.66 0.690461
Target:  5'- cUCGGCGuCguucgucCAGCgGCGGGCAcCGCg -3'
miRNA:   3'- uGGCCGCuGaa-----GUUG-CGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 7433 0.67 0.623496
Target:  5'- gGCCGGCcagcaguucGGCUUCGgccuucGCGCGAaugGCcUUGCa -3'
miRNA:   3'- -UGGCCG---------CUGAAGU------UGCGCU---CGuAGCG- -5'
26672 3' -54.8 NC_005808.1 + 7785 0.66 0.701485
Target:  5'- cGCCGGCGuccaccCUUCGcCGCccAGCAggCGCu -3'
miRNA:   3'- -UGGCCGCu-----GAAGUuGCGc-UCGUa-GCG- -5'
26672 3' -54.8 NC_005808.1 + 8191 0.79 0.119225
Target:  5'- uGCCGGCGAUUUCAuCGCGcacGGCcUCGUa -3'
miRNA:   3'- -UGGCCGCUGAAGUuGCGC---UCGuAGCG- -5'
26672 3' -54.8 NC_005808.1 + 8527 0.66 0.701485
Target:  5'- cGCCGGCGaACUU--GCcCaGGUAUCGCa -3'
miRNA:   3'- -UGGCCGC-UGAAguUGcGcUCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 8650 0.75 0.23802
Target:  5'- cGCCGGC--CUUCAucGCGCGgucGGCAUUGCg -3'
miRNA:   3'- -UGGCCGcuGAAGU--UGCGC---UCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 9316 0.7 0.431413
Target:  5'- gACCuGGCGGCgcacgUCGGCGCG-GCGg-GCg -3'
miRNA:   3'- -UGG-CCGCUGa----AGUUGCGCuCGUagCG- -5'
26672 3' -54.8 NC_005808.1 + 9480 0.66 0.702584
Target:  5'- -aCGGCGACauucagggccuugggUUCAugGgCGAggauguaggccgccGCGUCGCu -3'
miRNA:   3'- ugGCCGCUG---------------AAGUugC-GCU--------------CGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 9735 0.71 0.40268
Target:  5'- cGCgGGCGaACUgcUCGugGUGGGCG-CGCu -3'
miRNA:   3'- -UGgCCGC-UGA--AGUugCGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 9955 0.7 0.451221
Target:  5'- -gCGGCGccgaACUUCGAcaggacagcacCGCG-GCGUCGCg -3'
miRNA:   3'- ugGCCGC----UGAAGUU-----------GCGCuCGUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.