miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 41788 0.69 0.481838
Target:  5'- uUCGGCaagGGCUg-GGCGCGGcGCGUCGCc -3'
miRNA:   3'- uGGCCG---CUGAagUUGCGCU-CGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 38850 0.68 0.567794
Target:  5'- cCCGGCGAgaagugccgccCUcaUCAAaucCGCGAGCAUgaGCg -3'
miRNA:   3'- uGGCCGCU-----------GA--AGUU---GCGCUCGUAg-CG- -5'
26672 3' -54.8 NC_005808.1 + 38719 0.7 0.451221
Target:  5'- -gCGGCGACggCAGCGCGgccuacAGCGacggCGCc -3'
miRNA:   3'- ugGCCGCUGaaGUUGCGC------UCGUa---GCG- -5'
26672 3' -54.8 NC_005808.1 + 38165 0.71 0.393375
Target:  5'- cGCUGGCGGCUUCccccuGGCGCG-GCA-CGa -3'
miRNA:   3'- -UGGCCGCUGAAG-----UUGCGCuCGUaGCg -5'
26672 3' -54.8 NC_005808.1 + 37815 0.69 0.50174
Target:  5'- aGCCGGCGuGCUgggcgCAGUGUGGGCGaacgccgagaacaUCGCg -3'
miRNA:   3'- -UGGCCGC-UGAa----GUUGCGCUCGU-------------AGCG- -5'
26672 3' -54.8 NC_005808.1 + 37657 0.67 0.634699
Target:  5'- aACCucGCaGACgugCAGaccguCGCGGGCAUCGCu -3'
miRNA:   3'- -UGGc-CG-CUGaa-GUU-----GCGCUCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 37086 0.7 0.412122
Target:  5'- gGCCGGCGugUccuaCGACuuugGC-AGCAUCGCc -3'
miRNA:   3'- -UGGCCGCugAa---GUUG----CGcUCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 36592 0.68 0.567794
Target:  5'- cACCGGCGAagUCGuCGCcauuuuGAGCGaCGCa -3'
miRNA:   3'- -UGGCCGCUgaAGUuGCG------CUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 36219 0.67 0.601124
Target:  5'- gGCCGGCcugcgccuGAUUgcCGACGUGGGCcgguUCGCc -3'
miRNA:   3'- -UGGCCG--------CUGAa-GUUGCGCUCGu---AGCG- -5'
26672 3' -54.8 NC_005808.1 + 36153 0.72 0.332274
Target:  5'- -aCGGCGACgcCuuCGCGGGCggugguGUCGCg -3'
miRNA:   3'- ugGCCGCUGaaGuuGCGCUCG------UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 36052 0.7 0.441254
Target:  5'- cGCgGGCuGCUacgUCAACGCcAGCAUCGa -3'
miRNA:   3'- -UGgCCGcUGA---AGUUGCGcUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 35470 0.7 0.451221
Target:  5'- aGCCGaCGACUUCGcggACGUGAGCGgggaaacCGUg -3'
miRNA:   3'- -UGGCcGCUGAAGU---UGCGCUCGUa------GCG- -5'
26672 3' -54.8 NC_005808.1 + 35350 0.69 0.492266
Target:  5'- gGCCGGCGACaUCGGCccGCGccaguGGCcgaaGUUGCa -3'
miRNA:   3'- -UGGCCGCUGaAGUUG--CGC-----UCG----UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 35046 0.7 0.431413
Target:  5'- aGCCGGUGGCgccgCAGauCGAGCA-CGCc -3'
miRNA:   3'- -UGGCCGCUGaa--GUUgcGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 34746 0.68 0.578861
Target:  5'- cUgGGUGACUUCaAGCGCGuGCGccuggucaUCGUg -3'
miRNA:   3'- uGgCCGCUGAAG-UUGCGCuCGU--------AGCG- -5'
26672 3' -54.8 NC_005808.1 + 34088 0.72 0.348998
Target:  5'- cGCCGGCGACaUCAa---GGGCAUCGa -3'
miRNA:   3'- -UGGCCGCUGaAGUugcgCUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 33965 0.68 0.534949
Target:  5'- gGCCGGCGACcucgccaccgCAGCGgcCGAGaagCGCa -3'
miRNA:   3'- -UGGCCGCUGaa--------GUUGC--GCUCguaGCG- -5'
26672 3' -54.8 NC_005808.1 + 32881 0.7 0.46131
Target:  5'- cGCCcGCGGCUUCGAgGCGuaucucuucgagGGCAagGCg -3'
miRNA:   3'- -UGGcCGCUGAAGUUgCGC------------UCGUagCG- -5'
26672 3' -54.8 NC_005808.1 + 32853 0.66 0.690461
Target:  5'- cGCCuGGCcgcaGACggUCGGCGCcGAGauuGUCGCg -3'
miRNA:   3'- -UGG-CCG----CUGa-AGUUGCG-CUCg--UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 31709 0.66 0.67938
Target:  5'- uCCGGUGGaggaauaCGcCGCGcGCAUCGCg -3'
miRNA:   3'- uGGCCGCUgaa----GUuGCGCuCGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.