miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 31172 0.66 0.701485
Target:  5'- uAUCGGCGACcugC-ACGCcGGC-UCGCc -3'
miRNA:   3'- -UGGCCGCUGaa-GuUGCGcUCGuAGCG- -5'
26672 3' -54.8 NC_005808.1 + 31132 0.67 0.601124
Target:  5'- -gCGGgGACUuuUCAGCGCGA-CGaCGCu -3'
miRNA:   3'- ugGCCgCUGA--AGUUGCGCUcGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 31018 0.68 0.545829
Target:  5'- aGCCGGCGGCccu-GgGCG-GCAUgGCu -3'
miRNA:   3'- -UGGCCGCUGaaguUgCGCuCGUAgCG- -5'
26672 3' -54.8 NC_005808.1 + 30965 0.67 0.622376
Target:  5'- aGCUGGCGgacuACUUCGGCGUGAcgguggacgaucuGCucacgCGCg -3'
miRNA:   3'- -UGGCCGC----UGAAGUUGCGCU-------------CGua---GCG- -5'
26672 3' -54.8 NC_005808.1 + 30735 0.74 0.250918
Target:  5'- cAUgGGCGAUaUUGGCGCGGGguUCGCc -3'
miRNA:   3'- -UGgCCGCUGaAGUUGCGCUCguAGCG- -5'
26672 3' -54.8 NC_005808.1 + 30685 0.66 0.650377
Target:  5'- --aGGCGGCgggaauugucggugUUGugGCGGGCAUgGCu -3'
miRNA:   3'- uggCCGCUGa-------------AGUugCGCUCGUAgCG- -5'
26672 3' -54.8 NC_005808.1 + 30546 0.67 0.589974
Target:  5'- cAUCGGCgccaucGACUUCGacACGCuGGGCAagaccUCGCc -3'
miRNA:   3'- -UGGCCG------CUGAAGU--UGCG-CUCGU-----AGCG- -5'
26672 3' -54.8 NC_005808.1 + 30453 0.67 0.589974
Target:  5'- cGCCuacGCGGaagcgCAGCGCGuggcGCGUCGCg -3'
miRNA:   3'- -UGGc--CGCUgaa--GUUGCGCu---CGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 30424 0.69 0.471517
Target:  5'- gGCaUGGCGAUg--AGCGCGGGCAgggccUCGCc -3'
miRNA:   3'- -UG-GCCGCUGaagUUGCGCUCGU-----AGCG- -5'
26672 3' -54.8 NC_005808.1 + 30167 0.67 0.601124
Target:  5'- gUCGGCGACaUCGACaGCGccaccaaggacGGCAUCa- -3'
miRNA:   3'- uGGCCGCUGaAGUUG-CGC-----------UCGUAGcg -5'
26672 3' -54.8 NC_005808.1 + 29890 0.72 0.361057
Target:  5'- gGCCgGGCGACUugaacagccaggcuaUCAAgGCGGGCcUCGa -3'
miRNA:   3'- -UGG-CCGCUGA---------------AGUUgCGCUCGuAGCg -5'
26672 3' -54.8 NC_005808.1 + 29465 0.66 0.700386
Target:  5'- cACCaGGCGACga-AGCGCGcGGCcaguuccgcgucgGUCGUg -3'
miRNA:   3'- -UGG-CCGCUGaagUUGCGC-UCG-------------UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 29203 0.67 0.623496
Target:  5'- gACCGGCagg-UCgGACGCGcGCAUgGCg -3'
miRNA:   3'- -UGGCCGcugaAG-UUGCGCuCGUAgCG- -5'
26672 3' -54.8 NC_005808.1 + 29053 0.67 0.589974
Target:  5'- cACCGGCGGCUcguaggccaUCAGCGggucauccuCGGGCGcCGa -3'
miRNA:   3'- -UGGCCGCUGA---------AGUUGC---------GCUCGUaGCg -5'
26672 3' -54.8 NC_005808.1 + 28758 0.75 0.219718
Target:  5'- aGCgCGGUGcGCUucUCGGCGCGcacGGCGUCGCg -3'
miRNA:   3'- -UG-GCCGC-UGA--AGUUGCGC---UCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 28669 0.75 0.219718
Target:  5'- uGCCGGCGGCcucgcCAGCGCG-GCG-CGCc -3'
miRNA:   3'- -UGGCCGCUGaa---GUUGCGCuCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 28402 0.67 0.601124
Target:  5'- cGCCGGCGGCg-CGGCGCcAGUAgauGCc -3'
miRNA:   3'- -UGGCCGCUGaaGUUGCGcUCGUag-CG- -5'
26672 3' -54.8 NC_005808.1 + 28055 0.69 0.492266
Target:  5'- gUCGGCGACggucugcUCGAacaGCGGGCAgguggcCGCg -3'
miRNA:   3'- uGGCCGCUGa------AGUUg--CGCUCGUa-----GCG- -5'
26672 3' -54.8 NC_005808.1 + 27638 1.11 0.000654
Target:  5'- gACCGGCGACUUCAACGCGAGCAUCGCc -3'
miRNA:   3'- -UGGCCGCUGAAGUUGCGCUCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 27554 0.73 0.278437
Target:  5'- uGCCcGCa---UCAACGCGGGCAUCGCc -3'
miRNA:   3'- -UGGcCGcugaAGUUGCGCUCGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.