Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 28055 | 0.69 | 0.492266 |
Target: 5'- gUCGGCGACggucugcUCGAacaGCGGGCAgguggcCGCg -3' miRNA: 3'- uGGCCGCUGa------AGUUg--CGCUCGUa-----GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 4261 | 0.69 | 0.492266 |
Target: 5'- uGCCGGCcg--UCAGCGCcGGCAUgGUg -3' miRNA: 3'- -UGGCCGcugaAGUUGCGcUCGUAgCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 19052 | 0.72 | 0.332274 |
Target: 5'- cGCCGGCGGCgucgaUCAGCGUGucC-UCGCc -3' miRNA: 3'- -UGGCCGCUGa----AGUUGCGCucGuAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 16439 | 0.72 | 0.316146 |
Target: 5'- cGCCGGCGGCgUUgAACaCG-GCGUCGUa -3' miRNA: 3'- -UGGCCGCUG-AAgUUGcGCuCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 25741 | 0.72 | 0.316146 |
Target: 5'- cACCGGCGGCagC-ACGCuGGGCG-CGCu -3' miRNA: 3'- -UGGCCGCUGaaGuUGCG-CUCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 24182 | 0.73 | 0.300616 |
Target: 5'- uUCGGCGugUcCAugaGCGCGAGCA-CGUa -3' miRNA: 3'- uGGCCGCugAaGU---UGCGCUCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 18765 | 0.74 | 0.264387 |
Target: 5'- uGCCGGCGAUUUCuuccauCGUcAGCGUCGa -3' miRNA: 3'- -UGGCCGCUGAAGuu----GCGcUCGUAGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 8650 | 0.75 | 0.23802 |
Target: 5'- cGCCGGC--CUUCAucGCGCGgucGGCAUUGCg -3' miRNA: 3'- -UGGCCGcuGAAGU--UGCGC---UCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 28758 | 0.75 | 0.219718 |
Target: 5'- aGCgCGGUGcGCUucUCGGCGCGcacGGCGUCGCg -3' miRNA: 3'- -UG-GCCGC-UGA--AGUUGCGC---UCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 28669 | 0.75 | 0.219718 |
Target: 5'- uGCCGGCGGCcucgcCAGCGCG-GCG-CGCc -3' miRNA: 3'- -UGGCCGCUGaa---GUUGCGCuCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 36153 | 0.72 | 0.332274 |
Target: 5'- -aCGGCGACgcCuuCGCGGGCggugguGUCGCg -3' miRNA: 3'- ugGCCGCUGaaGuuGCGCUCG------UAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 16773 | 0.72 | 0.340562 |
Target: 5'- cACCGGCGACgUgAAgGCGAugGUCGCc -3' miRNA: 3'- -UGGCCGCUGaAgUUgCGCUcgUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 26269 | 0.69 | 0.481838 |
Target: 5'- cGCCGGCcuggUCGGCuCGcGCAUCGCg -3' miRNA: 3'- -UGGCCGcugaAGUUGcGCuCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 30424 | 0.69 | 0.471517 |
Target: 5'- gGCaUGGCGAUg--AGCGCGGGCAgggccUCGCc -3' miRNA: 3'- -UG-GCCGCUGaagUUGCGCUCGU-----AGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 35470 | 0.7 | 0.451221 |
Target: 5'- aGCCGaCGACUUCGcggACGUGAGCGgggaaacCGUg -3' miRNA: 3'- -UGGCcGCUGAAGU---UGCGCUCGUa------GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 36052 | 0.7 | 0.441254 |
Target: 5'- cGCgGGCuGCUacgUCAACGCcAGCAUCGa -3' miRNA: 3'- -UGgCCGcUGA---AGUUGCGcUCGUAGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 9316 | 0.7 | 0.431413 |
Target: 5'- gACCuGGCGGCgcacgUCGGCGCG-GCGg-GCg -3' miRNA: 3'- -UGG-CCGCUGa----AGUUGCGCuCGUagCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 35046 | 0.7 | 0.431413 |
Target: 5'- aGCCGGUGGCgccgCAGauCGAGCA-CGCc -3' miRNA: 3'- -UGGCCGCUGaa--GUUgcGCUCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 27500 | 0.71 | 0.40268 |
Target: 5'- uGCCGGCGGCcUCGGcCGCcAGCuucucggCGCg -3' miRNA: 3'- -UGGCCGCUGaAGUU-GCGcUCGua-----GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 9735 | 0.71 | 0.40268 |
Target: 5'- cGCgGGCGaACUgcUCGugGUGGGCG-CGCu -3' miRNA: 3'- -UGgCCGC-UGA--AGUugCGCUCGUaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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