Results 41 - 60 of 106 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 1042 | 0.69 | 0.513426 |
Target: 5'- gGCCGGCGGCagcaugUCGcCGCGAaccgGCGUC-Ca -3' miRNA: 3'- -UGGCCGCUGa-----AGUuGCGCU----CGUAGcG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 35350 | 0.69 | 0.492266 |
Target: 5'- gGCCGGCGACaUCGGCccGCGccaguGGCcgaaGUUGCa -3' miRNA: 3'- -UGGCCGCUGaAGUUG--CGC-----UCG----UAGCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 28055 | 0.69 | 0.492266 |
Target: 5'- gUCGGCGACggucugcUCGAacaGCGGGCAgguggcCGCg -3' miRNA: 3'- uGGCCGCUGa------AGUUg--CGCUCGUa-----GCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 4261 | 0.69 | 0.492266 |
Target: 5'- uGCCGGCcg--UCAGCGCcGGCAUgGUg -3' miRNA: 3'- -UGGCCGcugaAGUUGCGcUCGUAgCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 26269 | 0.69 | 0.481838 |
Target: 5'- cGCCGGCcuggUCGGCuCGcGCAUCGCg -3' miRNA: 3'- -UGGCCGcugaAGUUGcGCuCGUAGCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 30424 | 0.69 | 0.471517 |
Target: 5'- gGCaUGGCGAUg--AGCGCGGGCAgggccUCGCc -3' miRNA: 3'- -UG-GCCGCUGaagUUGCGCUCGU-----AGCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 35470 | 0.7 | 0.451221 |
Target: 5'- aGCCGaCGACUUCGcggACGUGAGCGgggaaacCGUg -3' miRNA: 3'- -UGGCcGCUGAAGU---UGCGCUCGUa------GCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 36052 | 0.7 | 0.441254 |
Target: 5'- cGCgGGCuGCUacgUCAACGCcAGCAUCGa -3' miRNA: 3'- -UGgCCGcUGA---AGUUGCGcUCGUAGCg -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 9316 | 0.7 | 0.431413 |
Target: 5'- gACCuGGCGGCgcacgUCGGCGCG-GCGg-GCg -3' miRNA: 3'- -UGG-CCGCUGa----AGUUGCGCuCGUagCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 35046 | 0.7 | 0.431413 |
Target: 5'- aGCCGGUGGCgccgCAGauCGAGCA-CGCc -3' miRNA: 3'- -UGGCCGCUGaa--GUUgcGCUCGUaGCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 34088 | 0.72 | 0.348998 |
Target: 5'- cGCCGGCGACaUCAa---GGGCAUCGa -3' miRNA: 3'- -UGGCCGCUGaAGUugcgCUCGUAGCg -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 6972 | 0.72 | 0.356717 |
Target: 5'- cGCuCGGUGGCUuuccgauggcuuUCAcacGCGCGAGCGggucggcUCGCg -3' miRNA: 3'- -UG-GCCGCUGA------------AGU---UGCGCUCGU-------AGCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 29890 | 0.72 | 0.361057 |
Target: 5'- gGCCgGGCGACUugaacagccaggcuaUCAAgGCGGGCcUCGa -3' miRNA: 3'- -UGG-CCGCUGA---------------AGUUgCGCUCGuAGCg -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 19045 | 0.71 | 0.37519 |
Target: 5'- uGCCGGCGAUgUCGGC-CGAGgcCAUCGa -3' miRNA: 3'- -UGGCCGCUGaAGUUGcGCUC--GUAGCg -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 14771 | 0.72 | 0.316146 |
Target: 5'- gGCCGGCGc---CAcCGCGGGCAgcgCGCg -3' miRNA: 3'- -UGGCCGCugaaGUuGCGCUCGUa--GCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 27554 | 0.73 | 0.278437 |
Target: 5'- uGCCcGCa---UCAACGCGGGCAUCGCc -3' miRNA: 3'- -UGGcCGcugaAGUUGCGCUCGUAGCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 30735 | 0.74 | 0.250918 |
Target: 5'- cAUgGGCGAUaUUGGCGCGGGguUCGCc -3' miRNA: 3'- -UGgCCGCUGaAGUUGCGCUCguAGCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 12472 | 0.75 | 0.225681 |
Target: 5'- gGCCGGCGGCgugUUcuGGCGCGGccuCAUCGCc -3' miRNA: 3'- -UGGCCGCUGa--AG--UUGCGCUc--GUAGCG- -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 17805 | 0.96 | 0.007224 |
Target: 5'- -aCGGCGACUUCAACGCGGGCAUCGa -3' miRNA: 3'- ugGCCGCUGAAGUUGCGCUCGUAGCg -5' |
|||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 9480 | 0.66 | 0.702584 |
Target: 5'- -aCGGCGACauucagggccuugggUUCAugGgCGAggauguaggccgccGCGUCGCu -3' miRNA: 3'- ugGCCGCUG---------------AAGUugC-GCU--------------CGUAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home