miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 17805 0.96 0.007224
Target:  5'- -aCGGCGACUUCAACGCGGGCAUCGa -3'
miRNA:   3'- ugGCCGCUGAAGUUGCGCUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 18398 0.67 0.589974
Target:  5'- cGCCGGUGGCggccacgUCGGCGaagguGGCGUUGUc -3'
miRNA:   3'- -UGGCCGCUGa------AGUUGCgc---UCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 18691 0.67 0.612301
Target:  5'- uGCCGGC-AUggaAGcCGCGGGCGUgGCg -3'
miRNA:   3'- -UGGCCGcUGaagUU-GCGCUCGUAgCG- -5'
26672 3' -54.8 NC_005808.1 + 18765 0.74 0.264387
Target:  5'- uGCCGGCGAUUUCuuccauCGUcAGCGUCGa -3'
miRNA:   3'- -UGGCCGCUGAAGuu----GCGcUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 19045 0.71 0.37519
Target:  5'- uGCCGGCGAUgUCGGC-CGAGgcCAUCGa -3'
miRNA:   3'- -UGGCCGCUGaAGUUGcGCUC--GUAGCg -5'
26672 3' -54.8 NC_005808.1 + 19052 0.72 0.332274
Target:  5'- cGCCGGCGGCgucgaUCAGCGUGucC-UCGCc -3'
miRNA:   3'- -UGGCCGCUGa----AGUUGCGCucGuAGCG- -5'
26672 3' -54.8 NC_005808.1 + 19145 0.68 0.567794
Target:  5'- cGCCGGCGugUac-GCGCGAacCAUcCGCa -3'
miRNA:   3'- -UGGCCGCugAaguUGCGCUc-GUA-GCG- -5'
26672 3' -54.8 NC_005808.1 + 19178 0.66 0.67938
Target:  5'- gGCCGGCGucgcACUgacCGGCGCGcuCAUCa- -3'
miRNA:   3'- -UGGCCGC----UGAa--GUUGCGCucGUAGcg -5'
26672 3' -54.8 NC_005808.1 + 19859 0.67 0.623496
Target:  5'- aGCgUGGUGAgUUCgGGCGUGccgaaGGCGUCGCg -3'
miRNA:   3'- -UG-GCCGCUgAAG-UUGCGC-----UCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 20308 0.68 0.561179
Target:  5'- uGCuCGGCGGCcgguugCGAUGCGGGCuggccuucaguggucGUUGCg -3'
miRNA:   3'- -UG-GCCGCUGaa----GUUGCGCUCG---------------UAGCG- -5'
26672 3' -54.8 NC_005808.1 + 20839 0.66 0.689356
Target:  5'- uGCCgGGCGGCcugUCcuaugugGACGCG-GCcgCGCc -3'
miRNA:   3'- -UGG-CCGCUGa--AG-------UUGCGCuCGuaGCG- -5'
26672 3' -54.8 NC_005808.1 + 21831 0.7 0.412122
Target:  5'- aGCCGcGCGAUgagUCgAGCGCGGcGCAgCGCc -3'
miRNA:   3'- -UGGC-CGCUGa--AG-UUGCGCU-CGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 22609 0.68 0.524145
Target:  5'- aGuuGGCGAgUUCuACGCGGaCAUCGg -3'
miRNA:   3'- -UggCCGCUgAAGuUGCGCUcGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 22819 0.66 0.694878
Target:  5'- gACUGGCccGACUUCGcCGCGcugccgacagccgacAGCG-CGCg -3'
miRNA:   3'- -UGGCCG--CUGAAGUuGCGC---------------UCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 23504 0.66 0.690461
Target:  5'- gACCuGCGGCagUucCGCGAGCG-CGCc -3'
miRNA:   3'- -UGGcCGCUGaaGuuGCGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 23910 0.67 0.612301
Target:  5'- cGCCcGCGGCUUCcAUGCcGGCAUagGCg -3'
miRNA:   3'- -UGGcCGCUGAAGuUGCGcUCGUAg-CG- -5'
26672 3' -54.8 NC_005808.1 + 24182 0.73 0.300616
Target:  5'- uUCGGCGugUcCAugaGCGCGAGCA-CGUa -3'
miRNA:   3'- uGGCCGCugAaGU---UGCGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 24746 0.66 0.668251
Target:  5'- uACCugGGCGACgaggCcacgGugGCGGGCAUCa- -3'
miRNA:   3'- -UGG--CCGCUGaa--G----UugCGCUCGUAGcg -5'
26672 3' -54.8 NC_005808.1 + 25166 0.68 0.534949
Target:  5'- uGCUGGCGgggccACUgcucaagggCGACGUGGGCGcCGCu -3'
miRNA:   3'- -UGGCCGC-----UGAa--------GUUGCGCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 25741 0.72 0.316146
Target:  5'- cACCGGCGGCagC-ACGCuGGGCG-CGCu -3'
miRNA:   3'- -UGGCCGCUGaaGuUGCG-CUCGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.