miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 3' -54.8 NC_005808.1 + 41788 0.69 0.481838
Target:  5'- uUCGGCaagGGCUg-GGCGCGGcGCGUCGCc -3'
miRNA:   3'- uGGCCG---CUGAagUUGCGCU-CGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 9955 0.7 0.451221
Target:  5'- -gCGGCGccgaACUUCGAcaggacagcacCGCG-GCGUCGCg -3'
miRNA:   3'- ugGCCGC----UGAAGUU-----------GCGCuCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 38165 0.71 0.393375
Target:  5'- cGCUGGCGGCUUCccccuGGCGCG-GCA-CGa -3'
miRNA:   3'- -UGGCCGCUGAAG-----UUGCGCuCGUaGCg -5'
26672 3' -54.8 NC_005808.1 + 30735 0.74 0.250918
Target:  5'- cAUgGGCGAUaUUGGCGCGGGguUCGCc -3'
miRNA:   3'- -UGgCCGCUGaAGUUGCGCUCguAGCG- -5'
26672 3' -54.8 NC_005808.1 + 25843 0.67 0.601124
Target:  5'- cGCCGGUGGCU---ACGCccacGAGCGUgacCGCc -3'
miRNA:   3'- -UGGCCGCUGAaguUGCG----CUCGUA---GCG- -5'
26672 3' -54.8 NC_005808.1 + 16346 0.68 0.545829
Target:  5'- gGCCGGCGGgugcccgugcCUUCGgcgACGCGcGCAaaacugCGCg -3'
miRNA:   3'- -UGGCCGCU----------GAAGU---UGCGCuCGUa-----GCG- -5'
26672 3' -54.8 NC_005808.1 + 26596 0.7 0.441254
Target:  5'- cACCGGCGACcugUCccUGCGcGCggCGCa -3'
miRNA:   3'- -UGGCCGCUGa--AGuuGCGCuCGuaGCG- -5'
26672 3' -54.8 NC_005808.1 + 12472 0.75 0.225681
Target:  5'- gGCCGGCGGCgugUUcuGGCGCGGccuCAUCGCc -3'
miRNA:   3'- -UGGCCGCUGa--AG--UUGCGCUc--GUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 33965 0.68 0.534949
Target:  5'- gGCCGGCGACcucgccaccgCAGCGgcCGAGaagCGCa -3'
miRNA:   3'- -UGGCCGCUGaa--------GUUGC--GCUCguaGCG- -5'
26672 3' -54.8 NC_005808.1 + 17805 0.96 0.007224
Target:  5'- -aCGGCGACUUCAACGCGGGCAUCGa -3'
miRNA:   3'- ugGCCGCUGAAGUUGCGCUCGUAGCg -5'
26672 3' -54.8 NC_005808.1 + 38719 0.7 0.451221
Target:  5'- -gCGGCGACggCAGCGCGgccuacAGCGacggCGCc -3'
miRNA:   3'- ugGCCGCUGaaGUUGCGC------UCGUa---GCG- -5'
26672 3' -54.8 NC_005808.1 + 37815 0.69 0.50174
Target:  5'- aGCCGGCGuGCUgggcgCAGUGUGGGCGaacgccgagaacaUCGCg -3'
miRNA:   3'- -UGGCCGC-UGAa----GUUGCGCUCGU-------------AGCG- -5'
26672 3' -54.8 NC_005808.1 + 14026 0.7 0.421701
Target:  5'- uGCCGGUGGC--CGACGUGcGCGcCGCg -3'
miRNA:   3'- -UGGCCGCUGaaGUUGCGCuCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 12329 0.71 0.40268
Target:  5'- uCCGGCGACUc--GCGCGAcCAgCGCa -3'
miRNA:   3'- uGGCCGCUGAaguUGCGCUcGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 6972 0.72 0.356717
Target:  5'- cGCuCGGUGGCUuuccgauggcuuUCAcacGCGCGAGCGggucggcUCGCg -3'
miRNA:   3'- -UG-GCCGCUGA------------AGU---UGCGCUCGU-------AGCG- -5'
26672 3' -54.8 NC_005808.1 + 27554 0.73 0.278437
Target:  5'- uGCCcGCa---UCAACGCGGGCAUCGCc -3'
miRNA:   3'- -UGGcCGcugaAGUUGCGCUCGUAGCG- -5'
26672 3' -54.8 NC_005808.1 + 18691 0.67 0.612301
Target:  5'- uGCCGGC-AUggaAGcCGCGGGCGUgGCg -3'
miRNA:   3'- -UGGCCGcUGaagUU-GCGCUCGUAgCG- -5'
26672 3' -54.8 NC_005808.1 + 30167 0.67 0.601124
Target:  5'- gUCGGCGACaUCGACaGCGccaccaaggacGGCAUCa- -3'
miRNA:   3'- uGGCCGCUGaAGUUG-CGC-----------UCGUAGcg -5'
26672 3' -54.8 NC_005808.1 + 17306 0.67 0.587748
Target:  5'- gGCCGGCcgcacgaccucaaGGCaUUCGACGaagugacCGAGCAgCGCg -3'
miRNA:   3'- -UGGCCG-------------CUG-AAGUUGC-------GCUCGUaGCG- -5'
26672 3' -54.8 NC_005808.1 + 31018 0.68 0.545829
Target:  5'- aGCCGGCGGCccu-GgGCG-GCAUgGCu -3'
miRNA:   3'- -UGGCCGCUGaaguUgCGCuCGUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.