Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 14588 | 0.66 | 0.6459 |
Target: 5'- uGCCGGCGGCcgauccgcuuUUCAGCa-GuGCGUCGg -3' miRNA: 3'- -UGGCCGCUG----------AAGUUGcgCuCGUAGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 20839 | 0.66 | 0.689356 |
Target: 5'- uGCCgGGCGGCcugUCcuaugugGACGCG-GCcgCGCc -3' miRNA: 3'- -UGG-CCGCUGa--AG-------UUGCGCuCGuaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 22819 | 0.66 | 0.694878 |
Target: 5'- gACUGGCccGACUUCGcCGCGcugccgacagccgacAGCG-CGCg -3' miRNA: 3'- -UGGCCG--CUGAAGUuGCGC---------------UCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 31132 | 0.67 | 0.601124 |
Target: 5'- -gCGGgGACUuuUCAGCGCGA-CGaCGCu -3' miRNA: 3'- ugGCCgCUGA--AGUUGCGCUcGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 13569 | 0.67 | 0.634699 |
Target: 5'- -aCGGCGAUgUUgAACGCGcGC-UCGCc -3' miRNA: 3'- ugGCCGCUG-AAgUUGCGCuCGuAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 12613 | 0.67 | 0.623496 |
Target: 5'- cGCaUGGCGc---CGACGCGcucGGCAUCGCu -3' miRNA: 3'- -UG-GCCGCugaaGUUGCGC---UCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 19859 | 0.67 | 0.623496 |
Target: 5'- aGCgUGGUGAgUUCgGGCGUGccgaaGGCGUCGCg -3' miRNA: 3'- -UG-GCCGCUgAAG-UUGCGC-----UCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 29203 | 0.67 | 0.623496 |
Target: 5'- gACCGGCagg-UCgGACGCGcGCAUgGCg -3' miRNA: 3'- -UGGCCGcugaAG-UUGCGCuCGUAgCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 29053 | 0.67 | 0.589974 |
Target: 5'- cACCGGCGGCUcguaggccaUCAGCGggucauccuCGGGCGcCGa -3' miRNA: 3'- -UGGCCGCUGA---------AGUUGC---------GCUCGUaGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 18398 | 0.67 | 0.589974 |
Target: 5'- cGCCGGUGGCggccacgUCGGCGaagguGGCGUUGUc -3' miRNA: 3'- -UGGCCGCUGa------AGUUGCgc---UCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 30453 | 0.67 | 0.589974 |
Target: 5'- cGCCuacGCGGaagcgCAGCGCGuggcGCGUCGCg -3' miRNA: 3'- -UGGc--CGCUgaa--GUUGCGCu---CGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 7240 | 0.67 | 0.634699 |
Target: 5'- uUCGGCcACU--GGCGCGGGCcgauGUCGCc -3' miRNA: 3'- uGGCCGcUGAagUUGCGCUCG----UAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 14891 | 0.67 | 0.623496 |
Target: 5'- gACCGGCGGCgagCcGCuGCcGGCG-CGCg -3' miRNA: 3'- -UGGCCGCUGaa-GuUG-CGcUCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 17306 | 0.67 | 0.587748 |
Target: 5'- gGCCGGCcgcacgaccucaaGGCaUUCGACGaagugacCGAGCAgCGCg -3' miRNA: 3'- -UGGCCG-------------CUG-AAGUUGC-------GCUCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 25843 | 0.67 | 0.601124 |
Target: 5'- cGCCGGUGGCU---ACGCccacGAGCGUgacCGCc -3' miRNA: 3'- -UGGCCGCUGAaguUGCG----CUCGUA---GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 30167 | 0.67 | 0.601124 |
Target: 5'- gUCGGCGACaUCGACaGCGccaccaaggacGGCAUCa- -3' miRNA: 3'- uGGCCGCUGaAGUUG-CGC-----------UCGUAGcg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 36219 | 0.67 | 0.601124 |
Target: 5'- gGCCGGCcugcgccuGAUUgcCGACGUGGGCcgguUCGCc -3' miRNA: 3'- -UGGCCG--------CUGAa-GUUGCGCUCGu---AGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 11587 | 0.67 | 0.601124 |
Target: 5'- gGCCGGCaagcccgugGACaggUCGcGCGUGAGCAgaUCGUc -3' miRNA: 3'- -UGGCCG---------CUGa--AGU-UGCGCUCGU--AGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 7433 | 0.67 | 0.623496 |
Target: 5'- gGCCGGCcagcaguucGGCUUCGgccuucGCGCGAaugGCcUUGCa -3' miRNA: 3'- -UGGCCG---------CUGAAGU------UGCGCU---CGuAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 30546 | 0.67 | 0.589974 |
Target: 5'- cAUCGGCgccaucGACUUCGacACGCuGGGCAagaccUCGCc -3' miRNA: 3'- -UGGCCG------CUGAAGU--UGCG-CUCGU-----AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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