Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 3' | -54.8 | NC_005808.1 | + | 27638 | 1.11 | 0.000654 |
Target: 5'- gACCGGCGACUUCAACGCGAGCAUCGCc -3' miRNA: 3'- -UGGCCGCUGAAGUUGCGCUCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 26596 | 0.7 | 0.441254 |
Target: 5'- cACCGGCGACcugUCccUGCGcGCggCGCa -3' miRNA: 3'- -UGGCCGCUGa--AGuuGCGCuCGuaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 9955 | 0.7 | 0.451221 |
Target: 5'- -gCGGCGccgaACUUCGAcaggacagcacCGCG-GCGUCGCg -3' miRNA: 3'- ugGCCGC----UGAAGUU-----------GCGCuCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 9480 | 0.66 | 0.702584 |
Target: 5'- -aCGGCGACauucagggccuugggUUCAugGgCGAggauguaggccgccGCGUCGCu -3' miRNA: 3'- ugGCCGCUG---------------AAGUugC-GCU--------------CGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 27554 | 0.73 | 0.278437 |
Target: 5'- uGCCcGCa---UCAACGCGGGCAUCGCc -3' miRNA: 3'- -UGGcCGcugaAGUUGCGCUCGUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 14771 | 0.72 | 0.316146 |
Target: 5'- gGCCGGCGc---CAcCGCGGGCAgcgCGCg -3' miRNA: 3'- -UGGCCGCugaaGUuGCGCUCGUa--GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 6972 | 0.72 | 0.356717 |
Target: 5'- cGCuCGGUGGCUuuccgauggcuuUCAcacGCGCGAGCGggucggcUCGCg -3' miRNA: 3'- -UG-GCCGCUGA------------AGU---UGCGCUCGU-------AGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 29890 | 0.72 | 0.361057 |
Target: 5'- gGCCgGGCGACUugaacagccaggcuaUCAAgGCGGGCcUCGa -3' miRNA: 3'- -UGG-CCGCUGA---------------AGUUgCGCUCGuAGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 12329 | 0.71 | 0.40268 |
Target: 5'- uCCGGCGACUc--GCGCGAcCAgCGCa -3' miRNA: 3'- uGGCCGCUGAaguUGCGCUcGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 2255 | 0.7 | 0.42557 |
Target: 5'- gGCCGGC-AgUUCGACGCGcaccacguugacgauGGguUCGCu -3' miRNA: 3'- -UGGCCGcUgAAGUUGCGC---------------UCguAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 21831 | 0.7 | 0.412122 |
Target: 5'- aGCCGcGCGAUgagUCgAGCGCGGcGCAgCGCc -3' miRNA: 3'- -UGGC-CGCUGa--AG-UUGCGCU-CGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 38165 | 0.71 | 0.393375 |
Target: 5'- cGCUGGCGGCUUCccccuGGCGCG-GCA-CGa -3' miRNA: 3'- -UGGCCGCUGAAG-----UUGCGCuCGUaGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 17805 | 0.96 | 0.007224 |
Target: 5'- -aCGGCGACUUCAACGCGGGCAUCGa -3' miRNA: 3'- ugGCCGCUGAAGUUGCGCUCGUAGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 14026 | 0.7 | 0.421701 |
Target: 5'- uGCCGGUGGC--CGACGUGcGCGcCGCg -3' miRNA: 3'- -UGGCCGCUGaaGUUGCGCuCGUaGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 12472 | 0.75 | 0.225681 |
Target: 5'- gGCCGGCGGCgugUUcuGGCGCGGccuCAUCGCc -3' miRNA: 3'- -UGGCCGCUGa--AG--UUGCGCUc--GUAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 19045 | 0.71 | 0.37519 |
Target: 5'- uGCCGGCGAUgUCGGC-CGAGgcCAUCGa -3' miRNA: 3'- -UGGCCGCUGaAGUUGcGCUC--GUAGCg -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 4178 | 0.7 | 0.421701 |
Target: 5'- aGCCGGCcGCcUCgAugGCGGGCAUguuggcCGCg -3' miRNA: 3'- -UGGCCGcUGaAG-UugCGCUCGUA------GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 38719 | 0.7 | 0.451221 |
Target: 5'- -gCGGCGACggCAGCGCGgccuacAGCGacggCGCc -3' miRNA: 3'- ugGCCGCUGaaGUUGCGC------UCGUa---GCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 30735 | 0.74 | 0.250918 |
Target: 5'- cAUgGGCGAUaUUGGCGCGGGguUCGCc -3' miRNA: 3'- -UGgCCGCUGaAGUUGCGCUCguAGCG- -5' |
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26672 | 3' | -54.8 | NC_005808.1 | + | 34088 | 0.72 | 0.348998 |
Target: 5'- cGCCGGCGACaUCAa---GGGCAUCGa -3' miRNA: 3'- -UGGCCGCUGaAGUugcgCUCGUAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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