miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 17093 0.67 0.351225
Target:  5'- -gGCGCGGuucUCGGCcgggcCUUGGGGCuugaccacgaaguugCGGCa -3'
miRNA:   3'- cgCGCGUC---AGCCGu----GAACUCCG---------------GCCG- -5'
26672 5' -59.5 NC_005808.1 + 2417 0.67 0.347914
Target:  5'- -aGCGUAGguguaCGGCAgc--AGGCCGGCc -3'
miRNA:   3'- cgCGCGUCa----GCCGUgaacUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 40839 0.67 0.347914
Target:  5'- aCGCGCca--GGCGC---AGGCCGGCc -3'
miRNA:   3'- cGCGCGucagCCGUGaacUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 5432 0.68 0.339733
Target:  5'- -gGCGCGGauggCGGCGUgggcGAGGUCGGUa -3'
miRNA:   3'- cgCGCGUCa---GCCGUGaa--CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 13290 0.68 0.331692
Target:  5'- aGCGCcgauuGCAG-C-GCGCc-GGGGCCGGCg -3'
miRNA:   3'- -CGCG-----CGUCaGcCGUGaaCUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 30036 0.68 0.331692
Target:  5'- cCGCGCA----GCGC--GAGGCCGGCa -3'
miRNA:   3'- cGCGCGUcagcCGUGaaCUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 25267 0.68 0.330896
Target:  5'- uCGCGCuGcUCGGuCACUucgucgaaugccuUGAGGUCGuGCg -3'
miRNA:   3'- cGCGCGuC-AGCC-GUGA-------------ACUCCGGC-CG- -5'
26672 5' -59.5 NC_005808.1 + 23289 0.68 0.326936
Target:  5'- uGCGCcacgaaugccuguuuGCGGcCGGCACU---GGCCGGg -3'
miRNA:   3'- -CGCG---------------CGUCaGCCGUGAacuCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 23924 0.68 0.323793
Target:  5'- cGCGUGguGUaacaGGCcg--GGGGCgGGCg -3'
miRNA:   3'- -CGCGCguCAg---CCGugaaCUCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 4800 0.68 0.323793
Target:  5'- aCGC-CGGcUGGCGCUgcggGAuugcuGGCCGGCg -3'
miRNA:   3'- cGCGcGUCaGCCGUGAa---CU-----CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18835 0.68 0.316034
Target:  5'- cGCgGCGCA-UCGGCcCggUGGcGCCGGCa -3'
miRNA:   3'- -CG-CGCGUcAGCCGuGa-ACUcCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 12373 0.68 0.316034
Target:  5'- uGCGCGuCGGUCGGCGagucGAuGCCuGCg -3'
miRNA:   3'- -CGCGC-GUCAGCCGUgaa-CUcCGGcCG- -5'
26672 5' -59.5 NC_005808.1 + 14676 0.68 0.308416
Target:  5'- gGUGCgGguGUUGaGCGCUUGAaGCCcGGCc -3'
miRNA:   3'- -CGCG-CguCAGC-CGUGAACUcCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 30309 0.68 0.30094
Target:  5'- cGC-CGUAGcCGGCACgcuGGGCCaGCa -3'
miRNA:   3'- -CGcGCGUCaGCCGUGaacUCCGGcCG- -5'
26672 5' -59.5 NC_005808.1 + 23743 0.69 0.293604
Target:  5'- gGCGCGCAG-CaGCGCcau--GCCGGCg -3'
miRNA:   3'- -CGCGCGUCaGcCGUGaacucCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 22060 0.69 0.293604
Target:  5'- cGCGCuugcucgggucGCGGUCGGCGCgc--GGCUcgauGGCg -3'
miRNA:   3'- -CGCG-----------CGUCAGCCGUGaacuCCGG----CCG- -5'
26672 5' -59.5 NC_005808.1 + 17643 0.69 0.286408
Target:  5'- cGUGCgGCAGUaCGGCcacgauCUUGAuGGCguCGGCg -3'
miRNA:   3'- -CGCG-CGUCA-GCCGu-----GAACU-CCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 35506 0.69 0.286408
Target:  5'- cGUGCGC-GUgGGCGCgccgUGgguAGGCCgcGGCg -3'
miRNA:   3'- -CGCGCGuCAgCCGUGa---AC---UCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 25488 0.69 0.284277
Target:  5'- gGCGCGCucgugcuuggucagGGUCaGGCcCgcgaUGAGGUCGGUu -3'
miRNA:   3'- -CGCGCG--------------UCAG-CCGuGa---ACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 34944 0.69 0.279352
Target:  5'- gGCGCGU-GUaCGGCAag-GA-GCCGGCg -3'
miRNA:   3'- -CGCGCGuCA-GCCGUgaaCUcCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.