miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 28822 0.66 0.399896
Target:  5'- aGCGCGCcgucGUCGGguUgc--GGCCGGa -3'
miRNA:   3'- -CGCGCGu---CAGCCguGaacuCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 8434 0.66 0.399896
Target:  5'- gGCGuCGCGGaacaUCGGCGC--GAuGUCGGCg -3'
miRNA:   3'- -CGC-GCGUC----AGCCGUGaaCUcCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 8999 0.66 0.399896
Target:  5'- cCGCGCGGg-GGCGCUUccagcAGG-CGGCg -3'
miRNA:   3'- cGCGCGUCagCCGUGAAc----UCCgGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23418 0.66 0.399896
Target:  5'- aGCGCGcCGGUCaGUGCgacgccGGCCGGg -3'
miRNA:   3'- -CGCGC-GUCAGcCGUGaacu--CCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 23628 0.67 0.382025
Target:  5'- aCGUGCGGUUGGUuucGCggua-GCCGGCg -3'
miRNA:   3'- cGCGCGUCAGCCG---UGaacucCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 39827 0.67 0.382025
Target:  5'- uGCGCaacgucgaGguGUCGGCA---GuGGUCGGCa -3'
miRNA:   3'- -CGCG--------CguCAGCCGUgaaCuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 39664 0.67 0.382025
Target:  5'- cCGCGCGacgCGGUg--UG-GGCCGGCa -3'
miRNA:   3'- cGCGCGUca-GCCGugaACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 28319 0.67 0.382025
Target:  5'- gGCGCGCucggcGUCGG-ACUcGAuGGCCuuGGCc -3'
miRNA:   3'- -CGCGCGu----CAGCCgUGAaCU-CCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 1687 0.67 0.373291
Target:  5'- cGCGCagGUAGUCGagaaauuCGCcgUG-GGCCGGCg -3'
miRNA:   3'- -CGCG--CGUCAGCc------GUGa-ACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 38819 0.67 0.373291
Target:  5'- gGCGCugGCuuUCGGCACgaccGAGGCuacguccagCGGCg -3'
miRNA:   3'- -CGCG--CGucAGCCGUGaa--CUCCG---------GCCG- -5'
26672 5' -59.5 NC_005808.1 + 17292 0.67 0.373291
Target:  5'- aGCGC-CGGU-GGCA----GGGCCGGCc -3'
miRNA:   3'- -CGCGcGUCAgCCGUgaacUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 5508 0.67 0.373291
Target:  5'- -aGCGCcaacUCGGUGcCUUGguaguuccAGGCCGGCa -3'
miRNA:   3'- cgCGCGuc--AGCCGU-GAAC--------UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 28649 0.67 0.372425
Target:  5'- cGCGCGCAGugccagaUCGGUGCcgGcGGCCucgccagcgcGGCg -3'
miRNA:   3'- -CGCGCGUC-------AGCCGUGaaCuCCGG----------CCG- -5'
26672 5' -59.5 NC_005808.1 + 8145 0.67 0.372425
Target:  5'- gGCGUGCGgguGUCGGCGCUgcgucccugcgcgUGcGcccggaugcuGCCGGCg -3'
miRNA:   3'- -CGCGCGU---CAGCCGUGA-------------ACuC----------CGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23983 0.67 0.364694
Target:  5'- uGCGCGUAuUCGGCGCacagacUGgcgaAGGUgGGCg -3'
miRNA:   3'- -CGCGCGUcAGCCGUGa-----AC----UCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 13392 0.67 0.364694
Target:  5'- aGCGCGCGGUuguaggCGGCAUcgUUGcGGUaaCGGUu -3'
miRNA:   3'- -CGCGCGUCA------GCCGUG--AACuCCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 30169 0.67 0.359602
Target:  5'- aGCG-GCAGUUGGCGCcagucggUGAaGGCCaugaaguagccgccgGGCu -3'
miRNA:   3'- -CGCgCGUCAGCCGUGa------ACU-CCGG---------------CCG- -5'
26672 5' -59.5 NC_005808.1 + 7385 0.67 0.359602
Target:  5'- gGCGgGCAccgCGGCgaccuuccaccaGCUUGAagccgggcaccggauGGCCGGCc -3'
miRNA:   3'- -CGCgCGUca-GCCG------------UGAACU---------------CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 13181 0.67 0.356234
Target:  5'- cCGCGC--UgGGCGCccuuGGCCGGCg -3'
miRNA:   3'- cGCGCGucAgCCGUGaacuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 38577 0.67 0.356234
Target:  5'- cCGCGCGGcaUGaCGCUgGuGGCCGGCg -3'
miRNA:   3'- cGCGCGUCa-GCcGUGAaCuCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.