miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 8423 0.72 0.184573
Target:  5'- cGUGCGCuuGUcuaCGGC-CUUGAGGCUuuGGCc -3'
miRNA:   3'- -CGCGCGu-CA---GCCGuGAACUCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 33055 0.71 0.189555
Target:  5'- cGCGUGCuGUCGuGCGCUUcaucGGGUCGcGCa -3'
miRNA:   3'- -CGCGCGuCAGC-CGUGAAc---UCCGGC-CG- -5'
26672 5' -59.5 NC_005808.1 + 13255 0.71 0.189555
Target:  5'- gGCGCGUGGuUCGaGgACUU--GGCCGGCg -3'
miRNA:   3'- -CGCGCGUC-AGC-CgUGAAcuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 4683 0.71 0.194655
Target:  5'- aGCGCGCcGgauagcgCGGCGagaauGGCCGGCa -3'
miRNA:   3'- -CGCGCGuCa------GCCGUgaacuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 4250 0.71 0.205215
Target:  5'- -gGCGUAGUCGGUGCcgGccgucAGcGCCGGCa -3'
miRNA:   3'- cgCGCGUCAGCCGUGaaC-----UC-CGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 29313 0.71 0.207386
Target:  5'- gGCGCGCuGcaaUCGGCGCUgaaagacgccaaggaUGGcaacuGGCUGGCg -3'
miRNA:   3'- -CGCGCGuC---AGCCGUGA---------------ACU-----CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 6670 0.71 0.216268
Target:  5'- cCGuCGUAGUUGGC-CUUGAGGUCGcCa -3'
miRNA:   3'- cGC-GCGUCAGCCGuGAACUCCGGCcG- -5'
26672 5' -59.5 NC_005808.1 + 18028 0.71 0.216268
Target:  5'- uGCGgGUucuuGUCGGCgggcuGCUUGGGGgccuuaCCGGCg -3'
miRNA:   3'- -CGCgCGu---CAGCCG-----UGAACUCC------GGCCG- -5'
26672 5' -59.5 NC_005808.1 + 23935 0.71 0.216268
Target:  5'- gGCGUGaUGGUCaGGCGCcgcccggcGAGGUCGGCa -3'
miRNA:   3'- -CGCGC-GUCAG-CCGUGaa------CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 24444 0.7 0.221983
Target:  5'- cGCGCGCGGccUCGGCGacaUUGAcGCCGa- -3'
miRNA:   3'- -CGCGCGUC--AGCCGUg--AACUcCGGCcg -5'
26672 5' -59.5 NC_005808.1 + 10196 0.7 0.239287
Target:  5'- gGCGCGCGGcuuuuuuUCGGUGCUggcuuccugcUGGgcGGCCGGg -3'
miRNA:   3'- -CGCGCGUC-------AGCCGUGA----------ACU--CCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 11558 0.7 0.251866
Target:  5'- uCGCGCAcGUUGGCccGCgcGAuugccucGGCCGGCa -3'
miRNA:   3'- cGCGCGU-CAGCCG--UGaaCU-------CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18170 0.7 0.25251
Target:  5'- cCGCGCg--CGGCACcgacaaaucGGGCCGGCu -3'
miRNA:   3'- cGCGCGucaGCCGUGaac------UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 26059 0.7 0.25251
Target:  5'- gGCGCGCuccaugcgcUCGGCgaACUcGGGGCgGGCc -3'
miRNA:   3'- -CGCGCGuc-------AGCCG--UGAaCUCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 5559 0.69 0.257703
Target:  5'- aCGCGCA--UGGCuucgaugucGAGGCCGGCa -3'
miRNA:   3'- cGCGCGUcaGCCGugaa-----CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 19349 0.69 0.259015
Target:  5'- gGCGC-CAGgCGGCggaauuGCcgUUGAGGUCGGCc -3'
miRNA:   3'- -CGCGcGUCaGCCG------UG--AACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 2841 0.69 0.262984
Target:  5'- aCGCGCAG-CGGCGCcagcaccagcgaGGGGCCuGGUu -3'
miRNA:   3'- cGCGCGUCaGCCGUGaa----------CUCCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 14742 0.69 0.26365
Target:  5'- aGCGCggacacguucuugaGCAG-CGGCGC----GGCCGGCg -3'
miRNA:   3'- -CGCG--------------CGUCaGCCGUGaacuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 27609 0.69 0.272435
Target:  5'- -gGCGUGGUCGucGCcCUUGAcgaugGGCCGGUg -3'
miRNA:   3'- cgCGCGUCAGC--CGuGAACU-----CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 28188 0.69 0.272435
Target:  5'- aCGCccaGCAGgugCGGCGcCUUGuccAGGUCGGCc -3'
miRNA:   3'- cGCG---CGUCa--GCCGU-GAAC---UCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.