miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 27672 1.12 0.000178
Target:  5'- gGCGCGCAGUCGGCACUUGAGGCCGGCc -3'
miRNA:   3'- -CGCGCGUCAGCCGUGAACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 24554 0.8 0.042851
Target:  5'- uCGCGCAGcgCGGCGauggcGAGGCCGGCc -3'
miRNA:   3'- cGCGCGUCa-GCCGUgaa--CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 28596 0.76 0.086215
Target:  5'- aGCGUGguGUCGGUcaguucCUugaaccgggcgcggaUGAGGCCGGCc -3'
miRNA:   3'- -CGCGCguCAGCCGu-----GA---------------ACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18440 0.76 0.08769
Target:  5'- aGCGCGCAGccgucgaGGCGCU--GGGCCaGGCg -3'
miRNA:   3'- -CGCGCGUCag-----CCGUGAacUCCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 29598 0.76 0.093832
Target:  5'- gGCGCGCGGUuugcCaguuguccagcgccgGGCGCUUGuGGCCGGg -3'
miRNA:   3'- -CGCGCGUCA----G---------------CCGUGAACuCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 17305 0.76 0.09543
Target:  5'- gGCGCGCAuccauucCGGCAUaUG-GGCCGGCu -3'
miRNA:   3'- -CGCGCGUca-----GCCGUGaACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 8662 0.75 0.098151
Target:  5'- uCGCGCGGUCGGCAUUgcguGCCGcGCg -3'
miRNA:   3'- cGCGCGUCAGCCGUGAacucCGGC-CG- -5'
26672 5' -59.5 NC_005808.1 + 244 0.75 0.106164
Target:  5'- aGgGCcgGCGGUagcgaauccccaGGCGCUUGAGGCaCGGCg -3'
miRNA:   3'- -CgCG--CGUCAg-----------CCGUGAACUCCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 5241 0.75 0.109783
Target:  5'- uCGCGCAGUucggcCGGCAggUcGGGGUCGGCa -3'
miRNA:   3'- cGCGCGUCA-----GCCGUgaA-CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 10915 0.75 0.112886
Target:  5'- uGCuGCaGCAGUuacUGGUGCUUGuGGCCGGUg -3'
miRNA:   3'- -CG-CG-CGUCA---GCCGUGAACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 1463 0.74 0.116072
Target:  5'- -gGCGCGGUCGGCGgcCUccUGgcAGGCCGGg -3'
miRNA:   3'- cgCGCGUCAGCCGU--GA--AC--UCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 2233 0.74 0.119342
Target:  5'- cGCGCaGCAGgCGGCGCgu--GGCCGcGCa -3'
miRNA:   3'- -CGCG-CGUCaGCCGUGaacuCCGGC-CG- -5'
26672 5' -59.5 NC_005808.1 + 9321 0.74 0.122697
Target:  5'- gGCgGCGCAcGUCGGCGCggcGGGCggCGGCa -3'
miRNA:   3'- -CG-CGCGU-CAGCCGUGaacUCCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 34240 0.74 0.133293
Target:  5'- -aGCGCGG-CGGCGCagGAGGUacUGGCa -3'
miRNA:   3'- cgCGCGUCaGCCGUGaaCUCCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 19761 0.73 0.14082
Target:  5'- cGCGCGCuGUCGGCugUcGGcaGCgCGGCg -3'
miRNA:   3'- -CGCGCGuCAGCCGugAaCUc-CG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 32064 0.73 0.157051
Target:  5'- uGCGCGUGG-CGGCGgaaagcGuGGCCGGCg -3'
miRNA:   3'- -CGCGCGUCaGCCGUgaa---CuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 19370 0.72 0.161366
Target:  5'- -gGCGCGGUCGGUggccGAGGCCgaGGCc -3'
miRNA:   3'- cgCGCGUCAGCCGugaaCUCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 14332 0.72 0.174955
Target:  5'- aGCGCGCGGUCauGGUGCgcaacauggUGAGcCUGGCg -3'
miRNA:   3'- -CGCGCGUCAG--CCGUGa--------ACUCcGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 27029 0.72 0.183101
Target:  5'- aGCGCGUcGUcacugaCGGCGCcauugaccuggacgUgGAGGCCGGCa -3'
miRNA:   3'- -CGCGCGuCA------GCCGUG--------------AaCUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 8423 0.72 0.184573
Target:  5'- cGUGCGCuuGUcuaCGGC-CUUGAGGCUuuGGCc -3'
miRNA:   3'- -CGCGCGu-CA---GCCGuGAACUCCGG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.