Results 1 - 20 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 7749 | 0.69 | 0.275185 |
Target: 5'- cUGCGCAGUcagcgauugcagcacCGGCGCgaucuGcGCCGGCg -3' miRNA: 3'- cGCGCGUCA---------------GCCGUGaacu-C-CGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 4250 | 0.71 | 0.205215 |
Target: 5'- -gGCGUAGUCGGUGCcgGccgucAGcGCCGGCa -3' miRNA: 3'- cgCGCGUCAGCCGUGaaC-----UC-CGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 23935 | 0.71 | 0.216268 |
Target: 5'- gGCGUGaUGGUCaGGCGCcgcccggcGAGGUCGGCa -3' miRNA: 3'- -CGCGC-GUCAG-CCGUGaa------CUCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 18028 | 0.71 | 0.216268 |
Target: 5'- uGCGgGUucuuGUCGGCgggcuGCUUGGGGgccuuaCCGGCg -3' miRNA: 3'- -CGCgCGu---CAGCCG-----UGAACUCC------GGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 24444 | 0.7 | 0.221983 |
Target: 5'- cGCGCGCGGccUCGGCGacaUUGAcGCCGa- -3' miRNA: 3'- -CGCGCGUC--AGCCGUg--AACUcCGGCcg -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 26059 | 0.7 | 0.25251 |
Target: 5'- gGCGCGCuccaugcgcUCGGCgaACUcGGGGCgGGCc -3' miRNA: 3'- -CGCGCGuc-------AGCCG--UGAaCUCCGgCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 19349 | 0.69 | 0.259015 |
Target: 5'- gGCGC-CAGgCGGCggaauuGCcgUUGAGGUCGGCc -3' miRNA: 3'- -CGCGcGUCaGCCG------UG--AACUCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 27609 | 0.69 | 0.272435 |
Target: 5'- -gGCGUGGUCGucGCcCUUGAcgaugGGCCGGUg -3' miRNA: 3'- cgCGCGUCAGC--CGuGAACU-----CCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 28188 | 0.69 | 0.272435 |
Target: 5'- aCGCccaGCAGgugCGGCGcCUUGuccAGGUCGGCc -3' miRNA: 3'- cGCG---CGUCa--GCCGU-GAAC---UCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 4683 | 0.71 | 0.194655 |
Target: 5'- aGCGCGCcGgauagcgCGGCGagaauGGCCGGCa -3' miRNA: 3'- -CGCGCGuCa------GCCGUgaacuCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 33055 | 0.71 | 0.189555 |
Target: 5'- cGCGUGCuGUCGuGCGCUUcaucGGGUCGcGCa -3' miRNA: 3'- -CGCGCGuCAGC-CGUGAAc---UCCGGC-CG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 8423 | 0.72 | 0.184573 |
Target: 5'- cGUGCGCuuGUcuaCGGC-CUUGAGGCUuuGGCc -3' miRNA: 3'- -CGCGCGu-CA---GCCGuGAACUCCGG--CCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 28596 | 0.76 | 0.086215 |
Target: 5'- aGCGUGguGUCGGUcaguucCUugaaccgggcgcggaUGAGGCCGGCc -3' miRNA: 3'- -CGCGCguCAGCCGu-----GA---------------ACUCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 29598 | 0.76 | 0.093832 |
Target: 5'- gGCGCGCGGUuugcCaguuguccagcgccgGGCGCUUGuGGCCGGg -3' miRNA: 3'- -CGCGCGUCA----G---------------CCGUGAACuCCGGCCg -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 17305 | 0.76 | 0.09543 |
Target: 5'- gGCGCGCAuccauucCGGCAUaUG-GGCCGGCu -3' miRNA: 3'- -CGCGCGUca-----GCCGUGaACuCCGGCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 8662 | 0.75 | 0.098151 |
Target: 5'- uCGCGCGGUCGGCAUUgcguGCCGcGCg -3' miRNA: 3'- cGCGCGUCAGCCGUGAacucCGGC-CG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 1463 | 0.74 | 0.116072 |
Target: 5'- -gGCGCGGUCGGCGgcCUccUGgcAGGCCGGg -3' miRNA: 3'- cgCGCGUCAGCCGU--GA--AC--UCCGGCCg -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 2233 | 0.74 | 0.119342 |
Target: 5'- cGCGCaGCAGgCGGCGCgu--GGCCGcGCa -3' miRNA: 3'- -CGCG-CGUCaGCCGUGaacuCCGGC-CG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 9321 | 0.74 | 0.122697 |
Target: 5'- gGCgGCGCAcGUCGGCGCggcGGGCggCGGCa -3' miRNA: 3'- -CG-CGCGU-CAGCCGUGaacUCCG--GCCG- -5' |
|||||||
26672 | 5' | -59.5 | NC_005808.1 | + | 34240 | 0.74 | 0.133293 |
Target: 5'- -aGCGCGG-CGGCGCagGAGGUacUGGCa -3' miRNA: 3'- cgCGCGUCaGCCGUGaaCUCCG--GCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home