miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 27672 1.12 0.000178
Target:  5'- gGCGCGCAGUCGGCACUUGAGGCCGGCc -3'
miRNA:   3'- -CGCGCGUCAGCCGUGAACUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 5559 0.69 0.257703
Target:  5'- aCGCGCA--UGGCuucgaugucGAGGCCGGCa -3'
miRNA:   3'- cGCGCGUcaGCCGugaa-----CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 14742 0.69 0.26365
Target:  5'- aGCGCggacacguucuugaGCAG-CGGCGC----GGCCGGCg -3'
miRNA:   3'- -CGCG--------------CGUCaGCCGUGaacuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 33932 0.66 0.446827
Target:  5'- uCGCGCGGcaCGcaaugccgaccGCGCgaUGaAGGCCGGCg -3'
miRNA:   3'- cGCGCGUCa-GC-----------CGUGa-AC-UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 10915 0.75 0.112886
Target:  5'- uGCuGCaGCAGUuacUGGUGCUUGuGGCCGGUg -3'
miRNA:   3'- -CG-CG-CGUCA---GCCGUGAACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 19761 0.73 0.14082
Target:  5'- cGCGCGCuGUCGGCugUcGGcaGCgCGGCg -3'
miRNA:   3'- -CGCGCGuCAGCCGugAaCUc-CG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 19370 0.72 0.161366
Target:  5'- -gGCGCGGUCGGUggccGAGGCCgaGGCc -3'
miRNA:   3'- cgCGCGUCAGCCGugaaCUCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 14332 0.72 0.174955
Target:  5'- aGCGCGCGGUCauGGUGCgcaacauggUGAGcCUGGCg -3'
miRNA:   3'- -CGCGCGUCAG--CCGUGa--------ACUCcGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 13255 0.71 0.189555
Target:  5'- gGCGCGUGGuUCGaGgACUU--GGCCGGCg -3'
miRNA:   3'- -CGCGCGUC-AGC-CgUGAAcuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 18170 0.7 0.25251
Target:  5'- cCGCGCg--CGGCACcgacaaaucGGGCCGGCu -3'
miRNA:   3'- cGCGCGucaGCCGUGaac------UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 6670 0.71 0.216268
Target:  5'- cCGuCGUAGUUGGC-CUUGAGGUCGcCa -3'
miRNA:   3'- cGC-GCGUCAGCCGuGAACUCCGGCcG- -5'
26672 5' -59.5 NC_005808.1 + 4504 0.72 0.184573
Target:  5'- uGCGCGCGGcgccacaGGCGCUUGAGcGCaucGCa -3'
miRNA:   3'- -CGCGCGUCag-----CCGUGAACUC-CGgc-CG- -5'
26672 5' -59.5 NC_005808.1 + 18440 0.76 0.08769
Target:  5'- aGCGCGCAGccgucgaGGCGCU--GGGCCaGGCg -3'
miRNA:   3'- -CGCGCGUCag-----CCGUGAacUCCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 10196 0.7 0.239287
Target:  5'- gGCGCGCGGcuuuuuuUCGGUGCUggcuuccugcUGGgcGGCCGGg -3'
miRNA:   3'- -CGCGCGUC-------AGCCGUGA----------ACU--CCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 244 0.75 0.106164
Target:  5'- aGgGCcgGCGGUagcgaauccccaGGCGCUUGAGGCaCGGCg -3'
miRNA:   3'- -CgCG--CGUCAg-----------CCGUGAACUCCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 27029 0.72 0.183101
Target:  5'- aGCGCGUcGUcacugaCGGCGCcauugaccuggacgUgGAGGCCGGCa -3'
miRNA:   3'- -CGCGCGuCA------GCCGUG--------------AaCUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 11558 0.7 0.251866
Target:  5'- uCGCGCAcGUUGGCccGCgcGAuugccucGGCCGGCa -3'
miRNA:   3'- cGCGCGU-CAGCCG--UGaaCU-------CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 2841 0.69 0.262984
Target:  5'- aCGCGCAG-CGGCGCcagcaccagcgaGGGGCCuGGUu -3'
miRNA:   3'- cGCGCGUCaGCCGUGaa----------CUCCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 5241 0.75 0.109783
Target:  5'- uCGCGCAGUucggcCGGCAggUcGGGGUCGGCa -3'
miRNA:   3'- cGCGCGUCA-----GCCGUgaA-CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 32064 0.73 0.157051
Target:  5'- uGCGCGUGG-CGGCGgaaagcGuGGCCGGCg -3'
miRNA:   3'- -CGCGCGUCaGCCGUgaa---CuCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.