miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 244 0.75 0.106164
Target:  5'- aGgGCcgGCGGUagcgaauccccaGGCGCUUGAGGCaCGGCg -3'
miRNA:   3'- -CgCG--CGUCAg-----------CCGUGAACUCCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 1082 0.66 0.427682
Target:  5'- cGCGCGCGGUagauugccuUGGC-CgUGucGCgCGGCa -3'
miRNA:   3'- -CGCGCGUCA---------GCCGuGaACucCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 1463 0.74 0.116072
Target:  5'- -gGCGCGGUCGGCGgcCUccUGgcAGGCCGGg -3'
miRNA:   3'- cgCGCGUCAGCCGU--GA--AC--UCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 1687 0.67 0.373291
Target:  5'- cGCGCagGUAGUCGagaaauuCGCcgUG-GGCCGGCg -3'
miRNA:   3'- -CGCG--CGUCAGCc------GUGa-ACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 1876 0.66 0.399896
Target:  5'- aGCcCGUGGcCGGCGCUggccGGGUgGGCg -3'
miRNA:   3'- -CGcGCGUCaGCCGUGAac--UCCGgCCG- -5'
26672 5' -59.5 NC_005808.1 + 1963 0.66 0.435282
Target:  5'- aGCGCGCGGcccugggggaaGGCACgcUGuAGGCC-GCg -3'
miRNA:   3'- -CGCGCGUCag---------CCGUGa-AC-UCCGGcCG- -5'
26672 5' -59.5 NC_005808.1 + 1982 0.66 0.427682
Target:  5'- cGgGCGCcaccugccgUGGCugauCUUGAGGCCcaGGCg -3'
miRNA:   3'- -CgCGCGuca------GCCGu---GAACUCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 2233 0.74 0.119342
Target:  5'- cGCGCaGCAGgCGGCGCgu--GGCCGcGCa -3'
miRNA:   3'- -CGCG-CGUCaGCCGUGaacuCCGGC-CG- -5'
26672 5' -59.5 NC_005808.1 + 2417 0.67 0.347914
Target:  5'- -aGCGUAGguguaCGGCAgc--AGGCCGGCc -3'
miRNA:   3'- cgCGCGUCa----GCCGUgaacUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 2841 0.69 0.262984
Target:  5'- aCGCGCAG-CGGCGCcagcaccagcgaGGGGCCuGGUu -3'
miRNA:   3'- cGCGCGUCaGCCGUGaa----------CUCCGG-CCG- -5'
26672 5' -59.5 NC_005808.1 + 4250 0.71 0.205215
Target:  5'- -gGCGUAGUCGGUGCcgGccgucAGcGCCGGCa -3'
miRNA:   3'- cgCGCGUCAGCCGUGaaC-----UC-CGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 4504 0.72 0.184573
Target:  5'- uGCGCGCGGcgccacaGGCGCUUGAGcGCaucGCa -3'
miRNA:   3'- -CGCGCGUCag-----CCGUGAACUC-CGgc-CG- -5'
26672 5' -59.5 NC_005808.1 + 4683 0.71 0.194655
Target:  5'- aGCGCGCcGgauagcgCGGCGagaauGGCCGGCa -3'
miRNA:   3'- -CGCGCGuCa------GCCGUgaacuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 4800 0.68 0.323793
Target:  5'- aCGC-CGGcUGGCGCUgcggGAuugcuGGCCGGCg -3'
miRNA:   3'- cGCGcGUCaGCCGUGAa---CU-----CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 5241 0.75 0.109783
Target:  5'- uCGCGCAGUucggcCGGCAggUcGGGGUCGGCa -3'
miRNA:   3'- cGCGCGUCA-----GCCGUgaA-CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 5432 0.68 0.339733
Target:  5'- -gGCGCGGauggCGGCGUgggcGAGGUCGGUa -3'
miRNA:   3'- cgCGCGUCa---GCCGUGaa--CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 5508 0.67 0.373291
Target:  5'- -aGCGCcaacUCGGUGcCUUGguaguuccAGGCCGGCa -3'
miRNA:   3'- cgCGCGuc--AGCCGU-GAAC--------UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 5559 0.69 0.257703
Target:  5'- aCGCGCA--UGGCuucgaugucGAGGCCGGCa -3'
miRNA:   3'- cGCGCGUcaGCCGugaa-----CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 5626 0.69 0.272435
Target:  5'- cGCGCGUGGcgCGGCgcaGCUUGcugguGGCUGGa -3'
miRNA:   3'- -CGCGCGUCa-GCCG---UGAACu----CCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 6670 0.71 0.216268
Target:  5'- cCGuCGUAGUUGGC-CUUGAGGUCGcCa -3'
miRNA:   3'- cGC-GCGUCAGCCGuGAACUCCGGCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.