miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 42501 0.66 0.433375
Target:  5'- gGCGCGCAGaacgaucuggaaaUGGCucGCUUcGAGGCaacccuaGGCg -3'
miRNA:   3'- -CGCGCGUCa------------GCCG--UGAA-CUCCGg------CCG- -5'
26672 5' -59.5 NC_005808.1 + 41278 0.66 0.418293
Target:  5'- uCGCGCuuGUCGGC-CUgGuGGCCGucGCc -3'
miRNA:   3'- cGCGCGu-CAGCCGuGAaCuCCGGC--CG- -5'
26672 5' -59.5 NC_005808.1 + 40839 0.67 0.347914
Target:  5'- aCGCGCca--GGCGC---AGGCCGGCc -3'
miRNA:   3'- cGCGCGucagCCGUGaacUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 40149 0.66 0.399896
Target:  5'- uUGUGCAacaucgUGGCGCcgaucuucGAGGCCGGCc -3'
miRNA:   3'- cGCGCGUca----GCCGUGaa------CUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 39827 0.67 0.382025
Target:  5'- uGCGCaacgucgaGguGUCGGCA---GuGGUCGGCa -3'
miRNA:   3'- -CGCG--------CguCAGCCGUgaaCuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 39664 0.67 0.382025
Target:  5'- cCGCGCGacgCGGUg--UG-GGCCGGCa -3'
miRNA:   3'- cGCGCGUca-GCCGugaACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 38819 0.67 0.373291
Target:  5'- gGCGCugGCuuUCGGCACgaccGAGGCuacguccagCGGCg -3'
miRNA:   3'- -CGCG--CGucAGCCGUGaa--CUCCG---------GCCG- -5'
26672 5' -59.5 NC_005808.1 + 38577 0.67 0.356234
Target:  5'- cCGCGCGGcaUGaCGCUgGuGGCCGGCg -3'
miRNA:   3'- cGCGCGUCa-GCcGUGAaCuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 37491 0.66 0.40903
Target:  5'- gGCGC-CAGccgcacCGGaCGCU--GGGCCGGCc -3'
miRNA:   3'- -CGCGcGUCa-----GCC-GUGAacUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 35506 0.69 0.286408
Target:  5'- cGUGCGC-GUgGGCGCgccgUGgguAGGCCgcGGCg -3'
miRNA:   3'- -CGCGCGuCAgCCGUGa---AC---UCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 34944 0.69 0.279352
Target:  5'- gGCGCGU-GUaCGGCAag-GA-GCCGGCg -3'
miRNA:   3'- -CGCGCGuCA-GCCGUgaaCUcCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 34240 0.74 0.133293
Target:  5'- -aGCGCGG-CGGCGCagGAGGUacUGGCa -3'
miRNA:   3'- cgCGCGUCaGCCGUGaaCUCCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 33932 0.66 0.446827
Target:  5'- uCGCGCGGcaCGcaaugccgaccGCGCgaUGaAGGCCGGCg -3'
miRNA:   3'- cGCGCGUCa-GC-----------CGUGa-AC-UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 33055 0.71 0.189555
Target:  5'- cGCGUGCuGUCGuGCGCUUcaucGGGUCGcGCa -3'
miRNA:   3'- -CGCGCGuCAGC-CGUGAAc---UCCGGC-CG- -5'
26672 5' -59.5 NC_005808.1 + 32064 0.73 0.157051
Target:  5'- uGCGCGUGG-CGGCGgaaagcGuGGCCGGCg -3'
miRNA:   3'- -CGCGCGUCaGCCGUgaa---CuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 30309 0.68 0.30094
Target:  5'- cGC-CGUAGcCGGCACgcuGGGCCaGCa -3'
miRNA:   3'- -CGcGCGUCaGCCGUGaacUCCGGcCG- -5'
26672 5' -59.5 NC_005808.1 + 30169 0.67 0.359602
Target:  5'- aGCG-GCAGUUGGCGCcagucggUGAaGGCCaugaaguagccgccgGGCu -3'
miRNA:   3'- -CGCgCGUCAGCCGUGa------ACU-CCGG---------------CCG- -5'
26672 5' -59.5 NC_005808.1 + 30036 0.68 0.331692
Target:  5'- cCGCGCA----GCGC--GAGGCCGGCa -3'
miRNA:   3'- cGCGCGUcagcCGUGaaCUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 29598 0.76 0.093832
Target:  5'- gGCGCGCGGUuugcCaguuguccagcgccgGGCGCUUGuGGCCGGg -3'
miRNA:   3'- -CGCGCGUCA----G---------------CCGUGAACuCCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 29462 0.66 0.446827
Target:  5'- -gGCGCAGUUGcagaacgaccCACgccuGGCCGGCa -3'
miRNA:   3'- cgCGCGUCAGCc---------GUGaacuCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.