miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26672 5' -59.5 NC_005808.1 + 7385 0.67 0.359602
Target:  5'- gGCGgGCAccgCGGCgaccuuccaccaGCUUGAagccgggcaccggauGGCCGGCc -3'
miRNA:   3'- -CGCgCGUca-GCCG------------UGAACU---------------CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 7749 0.69 0.275185
Target:  5'- cUGCGCAGUcagcgauugcagcacCGGCGCgaucuGcGCCGGCg -3'
miRNA:   3'- cGCGCGUCA---------------GCCGUGaacu-C-CGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 8145 0.67 0.372425
Target:  5'- gGCGUGCGgguGUCGGCGCUgcgucccugcgcgUGcGcccggaugcuGCCGGCg -3'
miRNA:   3'- -CGCGCGU---CAGCCGUGA-------------ACuC----------CGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 8423 0.72 0.184573
Target:  5'- cGUGCGCuuGUcuaCGGC-CUUGAGGCUuuGGCc -3'
miRNA:   3'- -CGCGCGu-CA---GCCGuGAACUCCGG--CCG- -5'
26672 5' -59.5 NC_005808.1 + 8434 0.66 0.399896
Target:  5'- gGCGuCGCGGaacaUCGGCGC--GAuGUCGGCg -3'
miRNA:   3'- -CGC-GCGUC----AGCCGUGaaCUcCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 8662 0.75 0.098151
Target:  5'- uCGCGCGGUCGGCAUUgcguGCCGcGCg -3'
miRNA:   3'- cGCGCGUCAGCCGUGAacucCGGC-CG- -5'
26672 5' -59.5 NC_005808.1 + 8775 0.66 0.40903
Target:  5'- uCGgGCAGcacgCGGCGCacgauGGGUCGGCc -3'
miRNA:   3'- cGCgCGUCa---GCCGUGaac--UCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 8999 0.66 0.399896
Target:  5'- cCGCGCGGg-GGCGCUUccagcAGG-CGGCg -3'
miRNA:   3'- cGCGCGUCagCCGUGAAc----UCCgGCCG- -5'
26672 5' -59.5 NC_005808.1 + 9321 0.74 0.122697
Target:  5'- gGCgGCGCAcGUCGGCGCggcGGGCggCGGCa -3'
miRNA:   3'- -CG-CGCGU-CAGCCGUGaacUCCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 10196 0.7 0.239287
Target:  5'- gGCGCGCGGcuuuuuuUCGGUGCUggcuuccugcUGGgcGGCCGGg -3'
miRNA:   3'- -CGCGCGUC-------AGCCGUGA----------ACU--CCGGCCg -5'
26672 5' -59.5 NC_005808.1 + 10867 0.66 0.40903
Target:  5'- uGCGUGgcuuCGGUCGGCGCgau-GcGCgCGGCg -3'
miRNA:   3'- -CGCGC----GUCAGCCGUGaacuC-CG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 10915 0.75 0.112886
Target:  5'- uGCuGCaGCAGUuacUGGUGCUUGuGGCCGGUg -3'
miRNA:   3'- -CG-CG-CGUCA---GCCGUGAACuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 11177 0.66 0.40903
Target:  5'- cGUGCGCuGGUCGGC-CguggUGAuGGUgCGGUc -3'
miRNA:   3'- -CGCGCG-UCAGCCGuGa---ACU-CCG-GCCG- -5'
26672 5' -59.5 NC_005808.1 + 11558 0.7 0.251866
Target:  5'- uCGCGCAcGUUGGCccGCgcGAuugccucGGCCGGCa -3'
miRNA:   3'- cGCGCGU-CAGCCG--UGaaCU-------CCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 12373 0.68 0.316034
Target:  5'- uGCGCGuCGGUCGGCGagucGAuGCCuGCg -3'
miRNA:   3'- -CGCGC-GUCAGCCGUgaa-CUcCGGcCG- -5'
26672 5' -59.5 NC_005808.1 + 13181 0.67 0.356234
Target:  5'- cCGCGC--UgGGCGCccuuGGCCGGCg -3'
miRNA:   3'- cGCGCGucAgCCGUGaacuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 13255 0.71 0.189555
Target:  5'- gGCGCGUGGuUCGaGgACUU--GGCCGGCg -3'
miRNA:   3'- -CGCGCGUC-AGC-CgUGAAcuCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 13290 0.68 0.331692
Target:  5'- aGCGCcgauuGCAG-C-GCGCc-GGGGCCGGCg -3'
miRNA:   3'- -CGCG-----CGUCaGcCGUGaaCUCCGGCCG- -5'
26672 5' -59.5 NC_005808.1 + 13392 0.67 0.364694
Target:  5'- aGCGCGCGGUuguaggCGGCAUcgUUGcGGUaaCGGUu -3'
miRNA:   3'- -CGCGCGUCA------GCCGUG--AACuCCG--GCCG- -5'
26672 5' -59.5 NC_005808.1 + 14332 0.72 0.174955
Target:  5'- aGCGCGCGGUCauGGUGCgcaacauggUGAGcCUGGCg -3'
miRNA:   3'- -CGCGCGUCAG--CCGUGa--------ACUCcGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.