miRNA display CGI


Results 81 - 100 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 2452 0.66 0.688471
Target:  5'- uCGGCGCCAcgaugUUGCaCAaggCGUGCUGCa -3'
miRNA:   3'- -GUUGCGGUa----GGCG-GUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 7972 0.66 0.688471
Target:  5'- uCGGCGCgCAUCgGguuuCCAUGUC--GCCGCg -3'
miRNA:   3'- -GUUGCG-GUAGgC----GGUAUAGcaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 11596 0.66 0.688471
Target:  5'- --cCGCCGgcuggCCGCCGggcagcaGUGCCaGCg -3'
miRNA:   3'- guuGCGGUa----GGCGGUauag---CACGG-CG- -5'
26677 3' -54.5 NC_005808.1 + 21734 0.66 0.688471
Target:  5'- gGAUGCCA-CCGUUGgg-CGcgGCCGCg -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGCa-CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25323 0.66 0.688471
Target:  5'- cCGGCGCUcgUCGCCGggAUUGUccagGCCGg -3'
miRNA:   3'- -GUUGCGGuaGGCGGUa-UAGCA----CGGCg -5'
26677 3' -54.5 NC_005808.1 + 27828 0.66 0.688471
Target:  5'- -cGCGCUGcCCGCgGUggCGccgGCCGCg -3'
miRNA:   3'- guUGCGGUaGGCGgUAuaGCa--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34867 0.66 0.699561
Target:  5'- aCAGCaaGCCggCCGCCGag-CGUgcGCUGCa -3'
miRNA:   3'- -GUUG--CGGuaGGCGGUauaGCA--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4270 0.66 0.699561
Target:  5'- uCAGCGCCGgcauggugaUgGCCGUGUCG-GCgGUg -3'
miRNA:   3'- -GUUGCGGUa--------GgCGGUAUAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 10316 0.66 0.677324
Target:  5'- aCuuCGCCAguUUCGCCAggcCGUaGCCGUc -3'
miRNA:   3'- -GuuGCGGU--AGGCGGUauaGCA-CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 27669 0.66 0.677324
Target:  5'- gGGCGCCAccUCCaCCGUGgucUUGgaauacagGCCGCg -3'
miRNA:   3'- gUUGCGGU--AGGcGGUAU---AGCa-------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26162 0.68 0.58747
Target:  5'- --uCGCCGUCUGCgAUG-CG-GUCGCa -3'
miRNA:   3'- guuGCGGUAGGCGgUAUaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8806 0.67 0.598668
Target:  5'- -cGCGCCGgucaguaccgaUCUGCUggGUCGggccaGCCGCa -3'
miRNA:   3'- guUGCGGU-----------AGGCGGuaUAGCa----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4016 0.67 0.621144
Target:  5'- -cGCGCCggCCaCCAgcGUCaUGCCGCg -3'
miRNA:   3'- guUGCGGuaGGcGGUa-UAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34427 0.67 0.621144
Target:  5'- gGACGCCAg-CGCCu--UCcuggGCCGCa -3'
miRNA:   3'- gUUGCGGUagGCGGuauAGca--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 29557 0.67 0.632402
Target:  5'- -cACGCCGugcucgggguaUCgCGUCAgGUCG-GCCGCg -3'
miRNA:   3'- guUGCGGU-----------AG-GCGGUaUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9490 0.66 0.653783
Target:  5'- gGGCGUCAugccagccuguUCCGCCGUggcgaacaguggcAUCaUGCUGCg -3'
miRNA:   3'- gUUGCGGU-----------AGGCGGUA-------------UAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34595 0.66 0.666132
Target:  5'- uGGCGCCAagggcacgUCCgacGCCGUG--GUGCUGCu -3'
miRNA:   3'- gUUGCGGU--------AGG---CGGUAUagCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24694 0.66 0.666132
Target:  5'- -cACGCCcaggcuGUCCaucgguGCCAgucgGUCGgGCCGCu -3'
miRNA:   3'- guUGCGG------UAGG------CGGUa---UAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 15735 0.66 0.666132
Target:  5'- gCGAgGCCAUgCGCUcgAcauaccgcaccUCGuUGCCGCc -3'
miRNA:   3'- -GUUgCGGUAgGCGGuaU-----------AGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 17294 0.66 0.670613
Target:  5'- cCGGCGCCGcgggcgcgcauccauUCCGgCAUAUgG-GCCGg -3'
miRNA:   3'- -GUUGCGGU---------------AGGCgGUAUAgCaCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.