miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 25049 0.7 0.448317
Target:  5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3'
miRNA:   3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 4412 0.7 0.458421
Target:  5'- ---aGCCGUUUucaCCAgAUCGUGCCGCg -3'
miRNA:   3'- guugCGGUAGGc--GGUaUAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4515 0.7 0.468647
Target:  5'- gCGGCGCCcgUgaacguggcgUGCUGggcgGUCGUGCCGCc -3'
miRNA:   3'- -GUUGCGGuaG----------GCGGUa---UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25381 0.7 0.472769
Target:  5'- aGGCGCCAgaagCCcuuuugcgaguuguaGCCGUc-CGUGCCGCc -3'
miRNA:   3'- gUUGCGGUa---GG---------------CGGUAuaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 7230 0.69 0.478987
Target:  5'- -uGCGCCGcgcucacccUCgGCgAUGUCG-GCCGCc -3'
miRNA:   3'- guUGCGGU---------AGgCGgUAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14821 0.69 0.489439
Target:  5'- gCGGCGCUGccUUCGCCcagGUCGaUGCCGUu -3'
miRNA:   3'- -GUUGCGGU--AGGCGGua-UAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 3753 0.69 0.49049
Target:  5'- -cACGUCGgugCCGCCGcuggacguagccucgGUCGUGCCGa -3'
miRNA:   3'- guUGCGGUa--GGCGGUa--------------UAGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 3869 0.69 0.510652
Target:  5'- aGGCGCCGU-CGCUGUAg---GCCGCg -3'
miRNA:   3'- gUUGCGGUAgGCGGUAUagcaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26115 0.68 0.532239
Target:  5'- -uGCGCCAUgCCGgCAUGuguUCGUcGCgGCa -3'
miRNA:   3'- guUGCGGUA-GGCgGUAU---AGCA-CGgCG- -5'
26677 3' -54.5 NC_005808.1 + 41868 0.68 0.554146
Target:  5'- ---gGUCAUCCGCCAggcgcUCGacuugGCCGUg -3'
miRNA:   3'- guugCGGUAGGCGGUau---AGCa----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 37267 0.68 0.554146
Target:  5'- gCGAUGCCAugcUgCGCCA---CGUGCuCGCg -3'
miRNA:   3'- -GUUGCGGU---AgGCGGUauaGCACG-GCG- -5'
26677 3' -54.5 NC_005808.1 + 19615 0.68 0.5652
Target:  5'- --uUGCCGUCCgggGUCAUG-CGgGCCGCg -3'
miRNA:   3'- guuGCGGUAGG---CGGUAUaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 10666 0.68 0.5652
Target:  5'- aAACGCg--CCGCCGUGUCcaGuuGCg -3'
miRNA:   3'- gUUGCGguaGGCGGUAUAGcaCggCG- -5'
26677 3' -54.5 NC_005808.1 + 24416 0.68 0.5652
Target:  5'- aAGCGCag-CCgGCCcgauuUGUCgGUGCCGCg -3'
miRNA:   3'- gUUGCGguaGG-CGGu----AUAG-CACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 38788 0.68 0.576311
Target:  5'- aCGGCGCCcccgaCCGCCugGUCaUGCUGCc -3'
miRNA:   3'- -GUUGCGGua---GGCGGuaUAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26162 0.68 0.58747
Target:  5'- --uCGCCGUCUGCgAUG-CG-GUCGCa -3'
miRNA:   3'- guuGCGGUAGGCGgUAUaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8806 0.67 0.598668
Target:  5'- -cGCGCCGgucaguaccgaUCUGCUggGUCGggccaGCCGCa -3'
miRNA:   3'- guUGCGGU-----------AGGCGGuaUAGCa----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4016 0.67 0.621144
Target:  5'- -cGCGCCggCCaCCAgcGUCaUGCCGCg -3'
miRNA:   3'- guUGCGGuaGGcGGUa-UAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34427 0.67 0.621144
Target:  5'- gGACGCCAg-CGCCu--UCcuggGCCGCa -3'
miRNA:   3'- gUUGCGGUagGCGGuauAGca--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 29557 0.67 0.632402
Target:  5'- -cACGCCGugcucgggguaUCgCGUCAgGUCG-GCCGCg -3'
miRNA:   3'- guUGCGGU-----------AG-GCGGUaUAGCaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.