Results 41 - 60 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 8940 | 0.66 | 0.687358 |
Target: 5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGg -3' miRNA: 3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCg -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 4441 | 0.66 | 0.688471 |
Target: 5'- ---gGCCGcaacaCCGCCAgg-CGUGCgGCu -3' miRNA: 3'- guugCGGUa----GGCGGUauaGCACGgCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 12004 | 0.66 | 0.695132 |
Target: 5'- cCGAUGCCA-CCGaCGUAUCccagcccaccaucUGCCGCa -3' miRNA: 3'- -GUUGCGGUaGGCgGUAUAGc------------ACGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 29299 | 0.66 | 0.699561 |
Target: 5'- aCAACGCCggCC-CCGg--CGcGCUGCa -3' miRNA: 3'- -GUUGCGGuaGGcGGUauaGCaCGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 15157 | 0.66 | 0.699561 |
Target: 5'- cCAGCGCCAgg-GCCug--CG-GCCGCc -3' miRNA: 3'- -GUUGCGGUaggCGGuauaGCaCGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 26270 | 0.66 | 0.699561 |
Target: 5'- aGugGCaccgaAUCgGCCAUGUCGUaCuCGCu -3' miRNA: 3'- gUugCGg----UAGgCGGUAUAGCAcG-GCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 12621 | 0.66 | 0.710582 |
Target: 5'- uCGACGgcugCAUCCagGCCGUcgUGcGCCGCg -3' miRNA: 3'- -GUUGCg---GUAGG--CGGUAuaGCaCGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 16942 | 0.81 | 0.08784 |
Target: 5'- aCGGCGCCGUCCaGCag---CGUGCCGCg -3' miRNA: 3'- -GUUGCGGUAGG-CGguauaGCACGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 34003 | 0.8 | 0.110813 |
Target: 5'- -uACGCCAUCCccacggucGCCGUgaccGUCGUGUCGCg -3' miRNA: 3'- guUGCGGUAGG--------CGGUA----UAGCACGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 5579 | 0.76 | 0.189489 |
Target: 5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3' miRNA: 3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 15844 | 0.74 | 0.248227 |
Target: 5'- -cACGCCGUCCGU---GUCGUGCUGg -3' miRNA: 3'- guUGCGGUAGGCGguaUAGCACGGCg -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 13155 | 0.74 | 0.27565 |
Target: 5'- -uGCGCCucgauGUCgGCCAgUGUCG-GCCGCg -3' miRNA: 3'- guUGCGG-----UAGgCGGU-AUAGCaCGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 32069 | 0.73 | 0.282874 |
Target: 5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3' miRNA: 3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 13527 | 0.72 | 0.34607 |
Target: 5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3' miRNA: 3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 8663 | 0.71 | 0.390426 |
Target: 5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3' miRNA: 3'- guUGCGgUAGgCGguauaGCACGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 36156 | 0.71 | 0.409179 |
Target: 5'- gCGACGCC-UUCGCgGgcgGUgGUGUCGCg -3' miRNA: 3'- -GUUGCGGuAGGCGgUa--UAgCACGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 32549 | 0.71 | 0.418764 |
Target: 5'- gGAUGCUG-CCGCCGg--CGaUGCCGCu -3' miRNA: 3'- gUUGCGGUaGGCGGUauaGC-ACGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 24591 | 0.7 | 0.428484 |
Target: 5'- ---gGCCGUCCGgCGUGUCcuUGCCGg -3' miRNA: 3'- guugCGGUAGGCgGUAUAGc-ACGGCg -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 36787 | 0.7 | 0.438336 |
Target: 5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3' miRNA: 3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5' |
|||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 18117 | 0.7 | 0.438336 |
Target: 5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3' miRNA: 3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home