miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 16942 0.81 0.08784
Target:  5'- aCGGCGCCGUCCaGCag---CGUGCCGCg -3'
miRNA:   3'- -GUUGCGGUAGG-CGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 18117 0.7 0.438336
Target:  5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3'
miRNA:   3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25049 0.7 0.448317
Target:  5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3'
miRNA:   3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 4412 0.7 0.458421
Target:  5'- ---aGCCGUUUucaCCAgAUCGUGCCGCg -3'
miRNA:   3'- guugCGGUAGGc--GGUaUAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24416 0.68 0.5652
Target:  5'- aAGCGCag-CCgGCCcgauuUGUCgGUGCCGCg -3'
miRNA:   3'- gUUGCGguaGG-CGGu----AUAG-CACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 10666 0.68 0.5652
Target:  5'- aAACGCg--CCGCCGUGUCcaGuuGCg -3'
miRNA:   3'- gUUGCGguaGGCGGUAUAGcaCggCG- -5'
26677 3' -54.5 NC_005808.1 + 19615 0.68 0.5652
Target:  5'- --uUGCCGUCCgggGUCAUG-CGgGCCGCg -3'
miRNA:   3'- guuGCGGUAGG---CGGUAUaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 37267 0.68 0.554146
Target:  5'- gCGAUGCCAugcUgCGCCA---CGUGCuCGCg -3'
miRNA:   3'- -GUUGCGGU---AgGCGGUauaGCACG-GCG- -5'
26677 3' -54.5 NC_005808.1 + 41868 0.68 0.554146
Target:  5'- ---gGUCAUCCGCCAggcgcUCGacuugGCCGUg -3'
miRNA:   3'- guugCGGUAGGCGGUau---AGCa----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26115 0.68 0.532239
Target:  5'- -uGCGCCAUgCCGgCAUGuguUCGUcGCgGCa -3'
miRNA:   3'- guUGCGGUA-GGCgGUAU---AGCA-CGgCG- -5'
26677 3' -54.5 NC_005808.1 + 3869 0.69 0.510652
Target:  5'- aGGCGCCGU-CGCUGUAg---GCCGCg -3'
miRNA:   3'- gUUGCGGUAgGCGGUAUagcaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4515 0.7 0.468647
Target:  5'- gCGGCGCCcgUgaacguggcgUGCUGggcgGUCGUGCCGCc -3'
miRNA:   3'- -GUUGCGGuaG----------GCGGUa---UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25381 0.7 0.472769
Target:  5'- aGGCGCCAgaagCCcuuuugcgaguuguaGCCGUc-CGUGCCGCc -3'
miRNA:   3'- gUUGCGGUa---GG---------------CGGUAuaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 7230 0.69 0.478987
Target:  5'- -uGCGCCGcgcucacccUCgGCgAUGUCG-GCCGCc -3'
miRNA:   3'- guUGCGGU---------AGgCGgUAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14821 0.69 0.489439
Target:  5'- gCGGCGCUGccUUCGCCcagGUCGaUGCCGUu -3'
miRNA:   3'- -GUUGCGGU--AGGCGGua-UAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 3753 0.69 0.49049
Target:  5'- -cACGUCGgugCCGCCGcuggacguagccucgGUCGUGCCGa -3'
miRNA:   3'- guUGCGGUa--GGCGGUa--------------UAGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 12621 0.66 0.710582
Target:  5'- uCGACGgcugCAUCCagGCCGUcgUGcGCCGCg -3'
miRNA:   3'- -GUUGCg---GUAGG--CGGUAuaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14051 0.77 0.164962
Target:  5'- gAugGCCGgcggCCGCaagGUCGUGCCGUu -3'
miRNA:   3'- gUugCGGUa---GGCGguaUAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4391 0.77 0.169628
Target:  5'- aGGCGCCGUCgCGCCGggccuugagCGUGCgGCa -3'
miRNA:   3'- gUUGCGGUAG-GCGGUaua------GCACGgCG- -5'
26677 3' -54.5 NC_005808.1 + 5806 0.76 0.194764
Target:  5'- gCAGCGCCAgcggauagUCgGgCAUggCGUGCCGCa -3'
miRNA:   3'- -GUUGCGGU--------AGgCgGUAuaGCACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.