miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 15735 0.66 0.666132
Target:  5'- gCGAgGCCAUgCGCUcgAcauaccgcaccUCGuUGCCGCc -3'
miRNA:   3'- -GUUgCGGUAgGCGGuaU-----------AGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24694 0.66 0.666132
Target:  5'- -cACGCCcaggcuGUCCaucgguGCCAgucgGUCGgGCCGCu -3'
miRNA:   3'- guUGCGG------UAGG------CGGUa---UAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34595 0.66 0.666132
Target:  5'- uGGCGCCAagggcacgUCCgacGCCGUG--GUGCUGCu -3'
miRNA:   3'- gUUGCGGU--------AGG---CGGUAUagCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9490 0.66 0.653783
Target:  5'- gGGCGUCAugccagccuguUCCGCCGUggcgaacaguggcAUCaUGCUGCg -3'
miRNA:   3'- gUUGCGGU-----------AGGCGGUA-------------UAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 29557 0.67 0.632402
Target:  5'- -cACGCCGugcucgggguaUCgCGUCAgGUCG-GCCGCg -3'
miRNA:   3'- guUGCGGU-----------AG-GCGGUaUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34427 0.67 0.621144
Target:  5'- gGACGCCAg-CGCCu--UCcuggGCCGCa -3'
miRNA:   3'- gUUGCGGUagGCGGuauAGca--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4016 0.67 0.621144
Target:  5'- -cGCGCCggCCaCCAgcGUCaUGCCGCg -3'
miRNA:   3'- guUGCGGuaGGcGGUa-UAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8806 0.67 0.598668
Target:  5'- -cGCGCCGgucaguaccgaUCUGCUggGUCGggccaGCCGCa -3'
miRNA:   3'- guUGCGGU-----------AGGCGGuaUAGCa----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 13527 0.72 0.34607
Target:  5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3'
miRNA:   3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25049 0.7 0.448317
Target:  5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3'
miRNA:   3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 18117 0.7 0.438336
Target:  5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3'
miRNA:   3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 36787 0.7 0.438336
Target:  5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3'
miRNA:   3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24591 0.7 0.428484
Target:  5'- ---gGCCGUCCGgCGUGUCcuUGCCGg -3'
miRNA:   3'- guugCGGUAGGCgGUAUAGc-ACGGCg -5'
26677 3' -54.5 NC_005808.1 + 32549 0.71 0.418764
Target:  5'- gGAUGCUG-CCGCCGg--CGaUGCCGCu -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 36156 0.71 0.409179
Target:  5'- gCGACGCC-UUCGCgGgcgGUgGUGUCGCg -3'
miRNA:   3'- -GUUGCGGuAGGCGgUa--UAgCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8663 0.71 0.390426
Target:  5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3'
miRNA:   3'- guUGCGgUAGgCGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 16942 0.81 0.08784
Target:  5'- aCGGCGCCGUCCaGCag---CGUGCCGCg -3'
miRNA:   3'- -GUUGCGGUAGG-CGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 5579 0.76 0.189489
Target:  5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3'
miRNA:   3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5'
26677 3' -54.5 NC_005808.1 + 15844 0.74 0.248227
Target:  5'- -cACGCCGUCCGU---GUCGUGCUGg -3'
miRNA:   3'- guUGCGGUAGGCGguaUAGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 26162 0.68 0.58747
Target:  5'- --uCGCCGUCUGCgAUG-CG-GUCGCa -3'
miRNA:   3'- guuGCGGUAGGCGgUAUaGCaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.