miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 5010 0.67 0.632402
Target:  5'- uCGGCGCaGUCCGCUu--UCaGcGCCGCg -3'
miRNA:   3'- -GUUGCGgUAGGCGGuauAG-CaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 5125 0.69 0.489439
Target:  5'- uGGCGCCGUugaaCUGCaa---CGUGCCGCg -3'
miRNA:   3'- gUUGCGGUA----GGCGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 5579 0.76 0.189489
Target:  5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3'
miRNA:   3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5'
26677 3' -54.5 NC_005808.1 + 5806 0.76 0.194764
Target:  5'- gCAGCGCCAgcggauagUCgGgCAUggCGUGCCGCa -3'
miRNA:   3'- -GUUGCGGU--------AGgCgGUAuaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 5896 0.68 0.542061
Target:  5'- uCAACGCCcaCCGCag-AUCGUccggcaucuuuucGCCGCu -3'
miRNA:   3'- -GUUGCGGuaGGCGguaUAGCA-------------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 6577 0.7 0.468647
Target:  5'- --uUGCCAUCCGCC---UCGgccaggggGCUGCg -3'
miRNA:   3'- guuGCGGUAGGCGGuauAGCa-------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 7230 0.69 0.478987
Target:  5'- -uGCGCCGcgcucacccUCgGCgAUGUCG-GCCGCc -3'
miRNA:   3'- guUGCGGU---------AGgCGgUAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 7972 0.66 0.688471
Target:  5'- uCGGCGCgCAUCgGguuuCCAUGUC--GCCGCg -3'
miRNA:   3'- -GUUGCG-GUAGgC----GGUAUAGcaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8663 0.71 0.390426
Target:  5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3'
miRNA:   3'- guUGCGgUAGgCGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8741 0.66 0.710582
Target:  5'- gGACaCCAgggCgCGCgCGUAUucaCGUGCCGCu -3'
miRNA:   3'- gUUGcGGUa--G-GCG-GUAUA---GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8806 0.67 0.598668
Target:  5'- -cGCGCCGgucaguaccgaUCUGCUggGUCGggccaGCCGCa -3'
miRNA:   3'- guUGCGGU-----------AGGCGGuaUAGCa----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8940 0.66 0.687358
Target:  5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGg -3'
miRNA:   3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 8987 0.75 0.223099
Target:  5'- gGugGCCGUgCCGCCAgcgGUggcCGUGCCGg -3'
miRNA:   3'- gUugCGGUA-GGCGGUa--UA---GCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 9029 0.69 0.478987
Target:  5'- gGugGCCGUgCCGCgAUAgccagCGgugGCCGUg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa----GCa--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9077 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9125 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9173 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9221 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9269 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9317 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.