miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 190 0.67 0.644786
Target:  5'- cCGGCGUCAUccCCGCCAUcagcAUCaugguggcguagguaUGCCGCa -3'
miRNA:   3'- -GUUGCGGUA--GGCGGUA----UAGc--------------ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 295 0.72 0.328547
Target:  5'- -uGCGCCGgaaggcgcgcucuUCCGuCCAgggCGUGCCGUa -3'
miRNA:   3'- guUGCGGU-------------AGGC-GGUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 1009 0.71 0.403495
Target:  5'- -cGCGCCAcuggccgggaaauacUCgGCCAUGcugaaCGUGCCGUg -3'
miRNA:   3'- guUGCGGU---------------AGgCGGUAUa----GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 1095 0.66 0.710582
Target:  5'- --uUGCC-UUgGCCGUGUCGcGCgGCa -3'
miRNA:   3'- guuGCGGuAGgCGGUAUAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 1160 0.69 0.483155
Target:  5'- --uCGCCGUCgauggugaaggacaGCCGUAUCGcgcUGCCGUg -3'
miRNA:   3'- guuGCGGUAGg-------------CGGUAUAGC---ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 1687 0.66 0.684018
Target:  5'- -cGCGCagguagucgagaaAUUCGCCGUGggccggCGUGCCGg -3'
miRNA:   3'- guUGCGg------------UAGGCGGUAUa-----GCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 2094 0.66 0.676206
Target:  5'- uCGGC-CCAgguggUCGCCGUGUCGUcgguauagauugcGCCGUu -3'
miRNA:   3'- -GUUGcGGUa----GGCGGUAUAGCA-------------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 2452 0.66 0.688471
Target:  5'- uCGGCGCCAcgaugUUGCaCAaggCGUGCUGCa -3'
miRNA:   3'- -GUUGCGGUa----GGCG-GUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 3753 0.69 0.49049
Target:  5'- -cACGUCGgugCCGCCGcuggacguagccucgGUCGUGCCGa -3'
miRNA:   3'- guUGCGGUa--GGCGGUa--------------UAGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 3869 0.69 0.510652
Target:  5'- aGGCGCCGU-CGCUGUAg---GCCGCg -3'
miRNA:   3'- gUUGCGGUAgGCGGUAUagcaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4016 0.67 0.621144
Target:  5'- -cGCGCCggCCaCCAgcGUCaUGCCGCg -3'
miRNA:   3'- guUGCGGuaGGcGGUa-UAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4098 0.66 0.676206
Target:  5'- -uGCGCCGugguguuUCCGCCAgccUGcGCUGCa -3'
miRNA:   3'- guUGCGGU-------AGGCGGUauaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4178 0.66 0.666132
Target:  5'- ---aGCCggCCGCCucgauggcgggcAUGUUG-GCCGCg -3'
miRNA:   3'- guugCGGuaGGCGG------------UAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4270 0.66 0.699561
Target:  5'- uCAGCGCCGgcauggugaUgGCCGUGUCG-GCgGUg -3'
miRNA:   3'- -GUUGCGGUa--------GgCGGUAUAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 4391 0.77 0.169628
Target:  5'- aGGCGCCGUCgCGCCGggccuugagCGUGCgGCa -3'
miRNA:   3'- gUUGCGGUAG-GCGGUaua------GCACGgCG- -5'
26677 3' -54.5 NC_005808.1 + 4412 0.7 0.458421
Target:  5'- ---aGCCGUUUucaCCAgAUCGUGCCGCg -3'
miRNA:   3'- guugCGGUAGGc--GGUaUAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4441 0.66 0.688471
Target:  5'- ---gGCCGcaacaCCGCCAgg-CGUGCgGCu -3'
miRNA:   3'- guugCGGUa----GGCGGUauaGCACGgCG- -5'
26677 3' -54.5 NC_005808.1 + 4515 0.7 0.468647
Target:  5'- gCGGCGCCcgUgaacguggcgUGCUGggcgGUCGUGCCGCc -3'
miRNA:   3'- -GUUGCGGuaG----------GCGGUa---UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4656 0.7 0.438336
Target:  5'- ---gGCCAUCgCGUCAagGUCGaUGCCGUa -3'
miRNA:   3'- guugCGGUAG-GCGGUa-UAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4947 0.68 0.532239
Target:  5'- gGGCGCCAcgaugcagCCG-CGUAUCGcGCUGCu -3'
miRNA:   3'- gUUGCGGUa-------GGCgGUAUAGCaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.