miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 42391 0.72 0.329367
Target:  5'- -uGCGCCAgUUCGCCGUGUCGcccgGCaGCg -3'
miRNA:   3'- guUGCGGU-AGGCGGUAUAGCa---CGgCG- -5'
26677 3' -54.5 NC_005808.1 + 41970 0.71 0.399733
Target:  5'- uCGACGCCGgaCGCCGUGUCcacggcGCUGCu -3'
miRNA:   3'- -GUUGCGGUagGCGGUAUAGca----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 41868 0.68 0.554146
Target:  5'- ---gGUCAUCCGCCAggcgcUCGacuugGCCGUg -3'
miRNA:   3'- guugCGGUAGGCGGUau---AGCa----CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 38788 0.68 0.576311
Target:  5'- aCGGCGCCcccgaCCGCCugGUCaUGCUGCc -3'
miRNA:   3'- -GUUGCGGua---GGCGGuaUAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 38424 0.66 0.710582
Target:  5'- --cCGCCAUCgaggcgGCCGgcuaccagAUCGUGCUGUc -3'
miRNA:   3'- guuGCGGUAGg-----CGGUa-------UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 37267 0.68 0.554146
Target:  5'- gCGAUGCCAugcUgCGCCA---CGUGCuCGCg -3'
miRNA:   3'- -GUUGCGGU---AgGCGGUauaGCACG-GCG- -5'
26677 3' -54.5 NC_005808.1 + 36787 0.7 0.438336
Target:  5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3'
miRNA:   3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 36156 0.71 0.409179
Target:  5'- gCGACGCC-UUCGCgGgcgGUgGUGUCGCg -3'
miRNA:   3'- -GUUGCGGuAGGCGgUa--UAgCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 35304 0.67 0.632402
Target:  5'- aCGGCGCCAUCCGCgAgcacuaCG-GCCcCg -3'
miRNA:   3'- -GUUGCGGUAGGCGgUaua---GCaCGGcG- -5'
26677 3' -54.5 NC_005808.1 + 34867 0.66 0.699561
Target:  5'- aCAGCaaGCCggCCGCCGag-CGUgcGCUGCa -3'
miRNA:   3'- -GUUG--CGGuaGGCGGUauaGCA--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34595 0.66 0.666132
Target:  5'- uGGCGCCAagggcacgUCCgacGCCGUG--GUGCUGCu -3'
miRNA:   3'- gUUGCGGU--------AGG---CGGUAUagCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34427 0.67 0.621144
Target:  5'- gGACGCCAg-CGCCu--UCcuggGCCGCa -3'
miRNA:   3'- gUUGCGGUagGCGGuauAGca--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34003 0.8 0.110813
Target:  5'- -uACGCCAUCCccacggucGCCGUgaccGUCGUGUCGCg -3'
miRNA:   3'- guUGCGGUAGG--------CGGUA----UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 33419 0.66 0.677324
Target:  5'- cCAACGUCGacggCGCCAaguUGUCGcUGCCGg -3'
miRNA:   3'- -GUUGCGGUag--GCGGU---AUAGC-ACGGCg -5'
26677 3' -54.5 NC_005808.1 + 32549 0.71 0.418764
Target:  5'- gGAUGCUG-CCGCCGg--CGaUGCCGCu -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 32069 0.73 0.282874
Target:  5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3'
miRNA:   3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 31498 0.66 0.677324
Target:  5'- uGACauaCCuugCCGCCGg--CGUGCUGCu -3'
miRNA:   3'- gUUGc--GGua-GGCGGUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 30365 0.68 0.5652
Target:  5'- uCGAUGCCGcugUUGCCGg--UGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUa--GGCGGUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 29557 0.67 0.632402
Target:  5'- -cACGCCGugcucgggguaUCgCGUCAgGUCG-GCCGCg -3'
miRNA:   3'- guUGCGGU-----------AG-GCGGUaUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 29299 0.66 0.699561
Target:  5'- aCAACGCCggCC-CCGg--CGcGCUGCa -3'
miRNA:   3'- -GUUGCGGuaGGcGGUauaGCaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.