miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 1687 0.66 0.684018
Target:  5'- -cGCGCagguagucgagaaAUUCGCCGUGggccggCGUGCCGg -3'
miRNA:   3'- guUGCGg------------UAGGCGGUAUa-----GCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 24694 0.66 0.666132
Target:  5'- -cACGCCcaggcuGUCCaucgguGCCAgucgGUCGgGCCGCu -3'
miRNA:   3'- guUGCGG------UAGG------CGGUa---UAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 15735 0.66 0.666132
Target:  5'- gCGAgGCCAUgCGCUcgAcauaccgcaccUCGuUGCCGCc -3'
miRNA:   3'- -GUUgCGGUAgGCGGuaU-----------AGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 17294 0.66 0.670613
Target:  5'- cCGGCGCCGcgggcgcgcauccauUCCGgCAUAUgG-GCCGg -3'
miRNA:   3'- -GUUGCGGU---------------AGGCgGUAUAgCaCGGCg -5'
26677 3' -54.5 NC_005808.1 + 12621 0.66 0.710582
Target:  5'- uCGACGgcugCAUCCagGCCGUcgUGcGCCGCg -3'
miRNA:   3'- -GUUGCg---GUAGG--CGGUAuaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 17623 0.66 0.699561
Target:  5'- ---gGCCucgauGUuuGCCGcAUCGUGCgGCa -3'
miRNA:   3'- guugCGG-----UAggCGGUaUAGCACGgCG- -5'
26677 3' -54.5 NC_005808.1 + 4098 0.66 0.676206
Target:  5'- -uGCGCCGugguguuUCCGCCAgccUGcGCUGCa -3'
miRNA:   3'- guUGCGGU-------AGGCGGUauaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 27669 0.66 0.677324
Target:  5'- gGGCGCCAccUCCaCCGUGgucUUGgaauacagGCCGCg -3'
miRNA:   3'- gUUGCGGU--AGGcGGUAU---AGCa-------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 10316 0.66 0.677324
Target:  5'- aCuuCGCCAguUUCGCCAggcCGUaGCCGUc -3'
miRNA:   3'- -GuuGCGGU--AGGCGGUauaGCA-CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34595 0.66 0.666132
Target:  5'- uGGCGCCAagggcacgUCCgacGCCGUG--GUGCUGCu -3'
miRNA:   3'- gUUGCGGU--------AGG---CGGUAUagCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9490 0.66 0.653783
Target:  5'- gGGCGUCAugccagccuguUCCGCCGUggcgaacaguggcAUCaUGCUGCg -3'
miRNA:   3'- gUUGCGGU-----------AGGCGGUA-------------UAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 1095 0.66 0.710582
Target:  5'- --uUGCC-UUgGCCGUGUCGcGCgGCa -3'
miRNA:   3'- guuGCGGuAGgCGGUAUAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 25323 0.66 0.688471
Target:  5'- cCGGCGCUcgUCGCCGggAUUGUccagGCCGg -3'
miRNA:   3'- -GUUGCGGuaGGCGGUa-UAGCA----CGGCg -5'
26677 3' -54.5 NC_005808.1 + 11596 0.66 0.688471
Target:  5'- --cCGCCGgcuggCCGCCGggcagcaGUGCCaGCg -3'
miRNA:   3'- guuGCGGUa----GGCGGUauag---CACGG-CG- -5'
26677 3' -54.5 NC_005808.1 + 7972 0.66 0.688471
Target:  5'- uCGGCGCgCAUCgGguuuCCAUGUC--GCCGCg -3'
miRNA:   3'- -GUUGCG-GUAGgC----GGUAUAGcaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34867 0.66 0.699561
Target:  5'- aCAGCaaGCCggCCGCCGag-CGUgcGCUGCa -3'
miRNA:   3'- -GUUG--CGGuaGGCGGUauaGCA--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 27828 0.66 0.688471
Target:  5'- -cGCGCUGcCCGCgGUggCGccgGCCGCg -3'
miRNA:   3'- guUGCGGUaGGCGgUAuaGCa--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 2452 0.66 0.688471
Target:  5'- uCGGCGCCAcgaugUUGCaCAaggCGUGCUGCa -3'
miRNA:   3'- -GUUGCGGUa----GGCG-GUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 21734 0.66 0.688471
Target:  5'- gGAUGCCA-CCGUUGgg-CGcgGCCGCg -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGCa-CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4270 0.66 0.699561
Target:  5'- uCAGCGCCGgcauggugaUgGCCGUGUCG-GCgGUg -3'
miRNA:   3'- -GUUGCGGUa--------GgCGGUAUAGCaCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.