miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 3869 0.69 0.510652
Target:  5'- aGGCGCCGU-CGCUGUAg---GCCGCg -3'
miRNA:   3'- gUUGCGGUAgGCGGUAUagcaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 18117 0.7 0.438336
Target:  5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3'
miRNA:   3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25049 0.7 0.448317
Target:  5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3'
miRNA:   3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5'
26677 3' -54.5 NC_005808.1 + 4412 0.7 0.458421
Target:  5'- ---aGCCGUUUucaCCAgAUCGUGCCGCg -3'
miRNA:   3'- guugCGGUAGGc--GGUaUAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4515 0.7 0.468647
Target:  5'- gCGGCGCCcgUgaacguggcgUGCUGggcgGUCGUGCCGCc -3'
miRNA:   3'- -GUUGCGGuaG----------GCGGUa---UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25381 0.7 0.472769
Target:  5'- aGGCGCCAgaagCCcuuuugcgaguuguaGCCGUc-CGUGCCGCc -3'
miRNA:   3'- gUUGCGGUa---GG---------------CGGUAuaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 7230 0.69 0.478987
Target:  5'- -uGCGCCGcgcucacccUCgGCgAUGUCG-GCCGCc -3'
miRNA:   3'- guUGCGGU---------AGgCGgUAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14821 0.69 0.489439
Target:  5'- gCGGCGCUGccUUCGCCcagGUCGaUGCCGUu -3'
miRNA:   3'- -GUUGCGGU--AGGCGGua-UAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 3753 0.69 0.49049
Target:  5'- -cACGUCGgugCCGCCGcuggacguagccucgGUCGUGCCGa -3'
miRNA:   3'- guUGCGGUa--GGCGGUa--------------UAGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 36787 0.7 0.438336
Target:  5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3'
miRNA:   3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 24591 0.7 0.428484
Target:  5'- ---gGCCGUCCGgCGUGUCcuUGCCGg -3'
miRNA:   3'- guugCGGUAGGCgGUAUAGc-ACGGCg -5'
26677 3' -54.5 NC_005808.1 + 32549 0.71 0.418764
Target:  5'- gGAUGCUG-CCGCCGg--CGaUGCCGCu -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 34003 0.8 0.110813
Target:  5'- -uACGCCAUCCccacggucGCCGUgaccGUCGUGUCGCg -3'
miRNA:   3'- guUGCGGUAGG--------CGGUA----UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 5579 0.76 0.189489
Target:  5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3'
miRNA:   3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5'
26677 3' -54.5 NC_005808.1 + 15844 0.74 0.248227
Target:  5'- -cACGCCGUCCGU---GUCGUGCUGg -3'
miRNA:   3'- guUGCGGUAGGCGguaUAGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 13155 0.74 0.27565
Target:  5'- -uGCGCCucgauGUCgGCCAgUGUCG-GCCGCg -3'
miRNA:   3'- guUGCGG-----UAGgCGGU-AUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 32069 0.73 0.282874
Target:  5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3'
miRNA:   3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 13527 0.72 0.34607
Target:  5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3'
miRNA:   3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 8663 0.71 0.390426
Target:  5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3'
miRNA:   3'- guUGCGgUAGgCGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 36156 0.71 0.409179
Target:  5'- gCGACGCC-UUCGCgGgcgGUgGUGUCGCg -3'
miRNA:   3'- -GUUGCGGuAGGCGgUa--UAgCACGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.