Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26677 | 3' | -54.5 | NC_005808.1 | + | 34867 | 0.66 | 0.699561 |
Target: 5'- aCAGCaaGCCggCCGCCGag-CGUgcGCUGCa -3' miRNA: 3'- -GUUG--CGGuaGGCGGUauaGCA--CGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 27828 | 0.66 | 0.688471 |
Target: 5'- -cGCGCUGcCCGCgGUggCGccgGCCGCg -3' miRNA: 3'- guUGCGGUaGGCGgUAuaGCa--CGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 25323 | 0.66 | 0.688471 |
Target: 5'- cCGGCGCUcgUCGCCGggAUUGUccagGCCGg -3' miRNA: 3'- -GUUGCGGuaGGCGGUa-UAGCA----CGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 21734 | 0.66 | 0.688471 |
Target: 5'- gGAUGCCA-CCGUUGgg-CGcgGCCGCg -3' miRNA: 3'- gUUGCGGUaGGCGGUauaGCa-CGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 11596 | 0.66 | 0.688471 |
Target: 5'- --cCGCCGgcuggCCGCCGggcagcaGUGCCaGCg -3' miRNA: 3'- guuGCGGUa----GGCGGUauag---CACGG-CG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 7972 | 0.66 | 0.688471 |
Target: 5'- uCGGCGCgCAUCgGguuuCCAUGUC--GCCGCg -3' miRNA: 3'- -GUUGCG-GUAGgC----GGUAUAGcaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 2452 | 0.66 | 0.688471 |
Target: 5'- uCGGCGCCAcgaugUUGCaCAaggCGUGCUGCa -3' miRNA: 3'- -GUUGCGGUa----GGCG-GUauaGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 1687 | 0.66 | 0.684018 |
Target: 5'- -cGCGCagguagucgagaaAUUCGCCGUGggccggCGUGCCGg -3' miRNA: 3'- guUGCGg------------UAGGCGGUAUa-----GCACGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 31498 | 0.66 | 0.677324 |
Target: 5'- uGACauaCCuugCCGCCGg--CGUGCUGCu -3' miRNA: 3'- gUUGc--GGua-GGCGGUauaGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 4270 | 0.66 | 0.699561 |
Target: 5'- uCAGCGCCGgcauggugaUgGCCGUGUCG-GCgGUg -3' miRNA: 3'- -GUUGCGGUa--------GgCGGUAUAGCaCGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 15157 | 0.66 | 0.699561 |
Target: 5'- cCAGCGCCAgg-GCCug--CG-GCCGCc -3' miRNA: 3'- -GUUGCGGUaggCGGuauaGCaCGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 8741 | 0.66 | 0.710582 |
Target: 5'- gGACaCCAgggCgCGCgCGUAUucaCGUGCCGCu -3' miRNA: 3'- gUUGcGGUa--G-GCG-GUAUA---GCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 16202 | 0.66 | 0.710582 |
Target: 5'- -cGCGCCAUUCGCCcgAagaCGUGagcaGCa -3' miRNA: 3'- guUGCGGUAGGCGGuaUa--GCACgg--CG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 38424 | 0.66 | 0.710582 |
Target: 5'- --cCGCCAUCgaggcgGCCGgcuaccagAUCGUGCUGUc -3' miRNA: 3'- guuGCGGUAGg-----CGGUa-------UAGCACGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 14701 | 0.66 | 0.654907 |
Target: 5'- --gUGCCAUCCGCgA---CGUGCUGg -3' miRNA: 3'- guuGCGGUAGGCGgUauaGCACGGCg -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 1095 | 0.66 | 0.710582 |
Target: 5'- --uUGCC-UUgGCCGUGUCGcGCgGCa -3' miRNA: 3'- guuGCGGuAGgCGGUAUAGCaCGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 26270 | 0.66 | 0.699561 |
Target: 5'- aGugGCaccgaAUCgGCCAUGUCGUaCuCGCu -3' miRNA: 3'- gUugCGg----UAGgCGGUAUAGCAcG-GCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 17623 | 0.66 | 0.699561 |
Target: 5'- ---gGCCucgauGUuuGCCGcAUCGUGCgGCa -3' miRNA: 3'- guugCGG-----UAggCGGUaUAGCACGgCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 8806 | 0.67 | 0.598668 |
Target: 5'- -cGCGCCGgucaguaccgaUCUGCUggGUCGggccaGCCGCa -3' miRNA: 3'- guUGCGGU-----------AGGCGGuaUAGCa----CGGCG- -5' |
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26677 | 3' | -54.5 | NC_005808.1 | + | 14773 | 0.67 | 0.614393 |
Target: 5'- cCGGCGCCA-CCGCgGgcagcgcgcgcgagGaCGUGCUGCg -3' miRNA: 3'- -GUUGCGGUaGGCGgUa-------------UaGCACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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