miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 5125 0.69 0.489439
Target:  5'- uGGCGCCGUugaaCUGCaa---CGUGCCGCg -3'
miRNA:   3'- gUUGCGGUA----GGCGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 6577 0.7 0.468647
Target:  5'- --uUGCCAUCCGCC---UCGgccaggggGCUGCg -3'
miRNA:   3'- guuGCGGUAGGCGGuauAGCa-------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9269 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 5806 0.76 0.194764
Target:  5'- gCAGCGCCAgcggauagUCgGgCAUggCGUGCCGCa -3'
miRNA:   3'- -GUUGCGGU--------AGgCgGUAuaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26157 0.66 0.6594
Target:  5'- aCGACGCCGUguucaacgCCGCCGgcgauuaccccgCG-GCCGUg -3'
miRNA:   3'- -GUUGCGGUA--------GGCGGUaua---------GCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25524 0.68 0.58747
Target:  5'- -cGCGCCGgcUUCGCCu--UCGUG-CGCg -3'
miRNA:   3'- guUGCGGU--AGGCGGuauAGCACgGCG- -5'
26677 3' -54.5 NC_005808.1 + 1009 0.71 0.403495
Target:  5'- -cGCGCCAcuggccgggaaauacUCgGCCAUGcugaaCGUGCCGUg -3'
miRNA:   3'- guUGCGGU---------------AGgCGGUAUa----GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4391 0.77 0.169628
Target:  5'- aGGCGCCGUCgCGCCGggccuugagCGUGCgGCa -3'
miRNA:   3'- gUUGCGGUAG-GCGGUaua------GCACGgCG- -5'
26677 3' -54.5 NC_005808.1 + 30365 0.68 0.5652
Target:  5'- uCGAUGCCGcugUUGCCGg--UGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUa--GGCGGUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14051 0.77 0.164962
Target:  5'- gAugGCCGgcggCCGCaagGUCGUGCCGUu -3'
miRNA:   3'- gUugCGGUa---GGCGguaUAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4656 0.7 0.438336
Target:  5'- ---gGCCAUCgCGUCAagGUCGaUGCCGUa -3'
miRNA:   3'- guugCGGUAG-GCGGUa-UAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 19287 0.69 0.499996
Target:  5'- -cACGUCAUCCcgGCCAgugcCG-GCCGCa -3'
miRNA:   3'- guUGCGGUAGG--CGGUaua-GCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 295 0.72 0.328547
Target:  5'- -uGCGCCGgaaggcgcgcucuUCCGuCCAgggCGUGCCGUa -3'
miRNA:   3'- guUGCGGU-------------AGGC-GGUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9317 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9125 0.74 0.253525
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 17967 0.75 0.216579
Target:  5'- --cCGCCGgcaCGCCAUGUgguucgaCGUGCCGCu -3'
miRNA:   3'- guuGCGGUag-GCGGUAUA-------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 20275 0.66 0.677324
Target:  5'- uCGGCGCguUCggcacgGCCAgcagcAUCGUGCUGCc -3'
miRNA:   3'- -GUUGCGguAGg-----CGGUa----UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4178 0.66 0.666132
Target:  5'- ---aGCCggCCGCCucgauggcgggcAUGUUG-GCCGCg -3'
miRNA:   3'- guugCGGuaGGCGG------------UAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 190 0.67 0.644786
Target:  5'- cCGGCGUCAUccCCGCCAUcagcAUCaugguggcguagguaUGCCGCa -3'
miRNA:   3'- -GUUGCGGUA--GGCGGUA----UAGc--------------ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14773 0.67 0.614393
Target:  5'- cCGGCGCCA-CCGCgGgcagcgcgcgcgagGaCGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUaGGCGgUa-------------UaGCACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.