miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 6577 0.7 0.468647
Target:  5'- --uUGCCAUCCGCC---UCGgccaggggGCUGCg -3'
miRNA:   3'- guuGCGGUAGGCGGuauAGCa-------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 9029 0.69 0.478987
Target:  5'- gGugGCCGUgCCGCgAUAgccagCGgugGCCGUg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa----GCa--CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 1160 0.69 0.483155
Target:  5'- --uCGCCGUCgauggugaaggacaGCCGUAUCGcgcUGCCGUg -3'
miRNA:   3'- guuGCGGUAGg-------------CGGUAUAGC---ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 5125 0.69 0.489439
Target:  5'- uGGCGCCGUugaaCUGCaa---CGUGCCGCg -3'
miRNA:   3'- gUUGCGGUA----GGCGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4947 0.68 0.532239
Target:  5'- gGGCGCCAcgaugcagCCG-CGUAUCGcGCUGCu -3'
miRNA:   3'- gUUGCGGUa-------GGCgGUAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 26270 0.66 0.699561
Target:  5'- aGugGCaccgaAUCgGCCAUGUCGUaCuCGCu -3'
miRNA:   3'- gUugCGg----UAGgCGGUAUAGCAcG-GCG- -5'
26677 3' -54.5 NC_005808.1 + 15157 0.66 0.699561
Target:  5'- cCAGCGCCAgg-GCCug--CG-GCCGCc -3'
miRNA:   3'- -GUUGCGGUaggCGGuauaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 29299 0.66 0.699561
Target:  5'- aCAACGCCggCC-CCGg--CGcGCUGCa -3'
miRNA:   3'- -GUUGCGGuaGGcGGUauaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 12004 0.66 0.695132
Target:  5'- cCGAUGCCA-CCGaCGUAUCccagcccaccaucUGCCGCa -3'
miRNA:   3'- -GUUGCGGUaGGCgGUAUAGc------------ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4441 0.66 0.688471
Target:  5'- ---gGCCGcaacaCCGCCAgg-CGUGCgGCu -3'
miRNA:   3'- guugCGGUa----GGCGGUauaGCACGgCG- -5'
26677 3' -54.5 NC_005808.1 + 8940 0.66 0.687358
Target:  5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGg -3'
miRNA:   3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 33419 0.66 0.677324
Target:  5'- cCAACGUCGacggCGCCAaguUGUCGcUGCCGg -3'
miRNA:   3'- -GUUGCGGUag--GCGGU---AUAGC-ACGGCg -5'
26677 3' -54.5 NC_005808.1 + 20275 0.66 0.677324
Target:  5'- uCGGCGCguUCggcacgGCCAgcagcAUCGUGCUGCc -3'
miRNA:   3'- -GUUGCGguAGg-----CGGUa----UAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 2094 0.66 0.676206
Target:  5'- uCGGC-CCAgguggUCGCCGUGUCGUcgguauagauugcGCCGUu -3'
miRNA:   3'- -GUUGcGGUa----GGCGGUAUAGCA-------------CGGCG- -5'
26677 3' -54.5 NC_005808.1 + 16454 0.66 0.666132
Target:  5'- aCGGCgaGCCGcUgCGCCAaAUC-UGCCGCg -3'
miRNA:   3'- -GUUG--CGGU-AgGCGGUaUAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 4178 0.66 0.666132
Target:  5'- ---aGCCggCCGCCucgauggcgggcAUGUUG-GCCGCg -3'
miRNA:   3'- guugCGGuaGGCGG------------UAUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 30365 0.68 0.5652
Target:  5'- uCGAUGCCGcugUUGCCGg--UGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUa--GGCGGUauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14773 0.67 0.614393
Target:  5'- cCGGCGCCA-CCGCgGgcagcgcgcgcgagGaCGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUaGGCGgUa-------------UaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 25524 0.68 0.58747
Target:  5'- -cGCGCCGgcUUCGCCu--UCGUG-CGCg -3'
miRNA:   3'- guUGCGGU--AGGCGGuauAGCACgGCG- -5'
26677 3' -54.5 NC_005808.1 + 16821 0.66 0.654907
Target:  5'- -cGCGCgCAUCgCgGCCA--UCGuUGCCGCc -3'
miRNA:   3'- guUGCG-GUAG-G-CGGUauAGC-ACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.