miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26677 3' -54.5 NC_005808.1 + 17967 0.75 0.216579
Target:  5'- --cCGCCGgcaCGCCAUGUgguucgaCGUGCCGCu -3'
miRNA:   3'- guuGCGGUag-GCGGUAUA-------GCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 17623 0.66 0.699561
Target:  5'- ---gGCCucgauGUuuGCCGcAUCGUGCgGCa -3'
miRNA:   3'- guugCGG-----UAggCGGUaUAGCACGgCG- -5'
26677 3' -54.5 NC_005808.1 + 17294 0.66 0.670613
Target:  5'- cCGGCGCCGcgggcgcgcauccauUCCGgCAUAUgG-GCCGg -3'
miRNA:   3'- -GUUGCGGU---------------AGGCgGUAUAgCaCGGCg -5'
26677 3' -54.5 NC_005808.1 + 16942 0.81 0.08784
Target:  5'- aCGGCGCCGUCCaGCag---CGUGCCGCg -3'
miRNA:   3'- -GUUGCGGUAGG-CGguauaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 16821 0.66 0.654907
Target:  5'- -cGCGCgCAUCgCgGCCA--UCGuUGCCGCc -3'
miRNA:   3'- guUGCG-GUAG-G-CGGUauAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 16454 0.66 0.666132
Target:  5'- aCGGCgaGCCGcUgCGCCAaAUC-UGCCGCg -3'
miRNA:   3'- -GUUG--CGGU-AgGCGGUaUAGcACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 16202 0.66 0.710582
Target:  5'- -cGCGCCAUUCGCCcgAagaCGUGagcaGCa -3'
miRNA:   3'- guUGCGGUAGGCGGuaUa--GCACgg--CG- -5'
26677 3' -54.5 NC_005808.1 + 15844 0.74 0.248227
Target:  5'- -cACGCCGUCCGU---GUCGUGCUGg -3'
miRNA:   3'- guUGCGGUAGGCGguaUAGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 15735 0.66 0.666132
Target:  5'- gCGAgGCCAUgCGCUcgAcauaccgcaccUCGuUGCCGCc -3'
miRNA:   3'- -GUUgCGGUAgGCGGuaU-----------AGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 15157 0.66 0.699561
Target:  5'- cCAGCGCCAgg-GCCug--CG-GCCGCc -3'
miRNA:   3'- -GUUGCGGUaggCGGuauaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14821 0.69 0.489439
Target:  5'- gCGGCGCUGccUUCGCCcagGUCGaUGCCGUu -3'
miRNA:   3'- -GUUGCGGU--AGGCGGua-UAGC-ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14773 0.67 0.614393
Target:  5'- cCGGCGCCA-CCGCgGgcagcgcgcgcgagGaCGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUaGGCGgUa-------------UaGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 14701 0.66 0.654907
Target:  5'- --gUGCCAUCCGCgA---CGUGCUGg -3'
miRNA:   3'- guuGCGGUAGGCGgUauaGCACGGCg -5'
26677 3' -54.5 NC_005808.1 + 14051 0.77 0.164962
Target:  5'- gAugGCCGgcggCCGCaagGUCGUGCCGUu -3'
miRNA:   3'- gUugCGGUa---GGCGguaUAGCACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 13527 0.72 0.34607
Target:  5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3'
miRNA:   3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 13155 0.74 0.27565
Target:  5'- -uGCGCCucgauGUCgGCCAgUGUCG-GCCGCg -3'
miRNA:   3'- guUGCGG-----UAGgCGGU-AUAGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 12621 0.66 0.710582
Target:  5'- uCGACGgcugCAUCCagGCCGUcgUGcGCCGCg -3'
miRNA:   3'- -GUUGCg---GUAGG--CGGUAuaGCaCGGCG- -5'
26677 3' -54.5 NC_005808.1 + 12004 0.66 0.695132
Target:  5'- cCGAUGCCA-CCGaCGUAUCccagcccaccaucUGCCGCa -3'
miRNA:   3'- -GUUGCGGUaGGCgGUAUAGc------------ACGGCG- -5'
26677 3' -54.5 NC_005808.1 + 11596 0.66 0.688471
Target:  5'- --cCGCCGgcuggCCGCCGggcagcaGUGCCaGCg -3'
miRNA:   3'- guuGCGGUa----GGCGGUauag---CACGG-CG- -5'
26677 3' -54.5 NC_005808.1 + 10666 0.68 0.5652
Target:  5'- aAACGCg--CCGCCGUGUCcaGuuGCg -3'
miRNA:   3'- gUUGCGguaGGCGGUAUAGcaCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.