miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 18966 0.66 0.791957
Target:  5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3'
miRNA:   3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 13300 0.66 0.787859
Target:  5'- --gUGCUgGGCAaggGCCAGCAGuucGUCGCc -3'
miRNA:   3'- gaaACGG-CCGUga-UGGUUGUU---CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 13210 0.66 0.787859
Target:  5'- --cUGCUGGC-CUACCGcgcCGAGuCCGa -3'
miRNA:   3'- gaaACGGCCGuGAUGGUu--GUUC-GGCg -5'
26678 5' -52.6 NC_005808.1 + 21324 0.66 0.787859
Target:  5'- gCUggGCCGaCACUuacGCCGACAuGCUGg -3'
miRNA:   3'- -GAaaCGGCcGUGA---UGGUUGUuCGGCg -5'
26678 5' -52.6 NC_005808.1 + 27985 0.66 0.787859
Target:  5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3'
miRNA:   3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5'
26678 5' -52.6 NC_005808.1 + 4667 0.66 0.787859
Target:  5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3'
miRNA:   3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5'
26678 5' -52.6 NC_005808.1 + 24136 0.66 0.777492
Target:  5'- ---gGCCGaCGCcGCCGGC--GCCGCg -3'
miRNA:   3'- gaaaCGGCcGUGaUGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 14845 0.66 0.777492
Target:  5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3'
miRNA:   3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5'
26678 5' -52.6 NC_005808.1 + 33910 0.66 0.777492
Target:  5'- ---gGCCaGUAC-ACCAACGccgaGGUCGCg -3'
miRNA:   3'- gaaaCGGcCGUGaUGGUUGU----UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9688 0.66 0.777492
Target:  5'- ---aGCCGuGCAg-GCCGu--GGCCGCa -3'
miRNA:   3'- gaaaCGGC-CGUgaUGGUuguUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 42080 0.66 0.777492
Target:  5'- ---gGCCGaaCAgaACCGccuGCAAGCCGCc -3'
miRNA:   3'- gaaaCGGCc-GUgaUGGU---UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 23183 0.66 0.777492
Target:  5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3'
miRNA:   3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 20279 0.66 0.777492
Target:  5'- ---cGCguuCGGCACgGCCAGCAGcaucguGCUGCc -3'
miRNA:   3'- gaaaCG---GCCGUGaUGGUUGUU------CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 33603 0.66 0.777492
Target:  5'- ----uCCGGCACgGCCAccGCuGGCgGCa -3'
miRNA:   3'- gaaacGGCCGUGaUGGU--UGuUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 34949 0.66 0.776446
Target:  5'- --gUGUaCGGCAaggaGCCGGCGugggucgAGCCGCg -3'
miRNA:   3'- gaaACG-GCCGUga--UGGUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 33911 0.66 0.766961
Target:  5'- --cUGCgCGGCGCacACCugggcgcGCAgcAGCCGCu -3'
miRNA:   3'- gaaACG-GCCGUGa-UGGu------UGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 4695 0.66 0.766961
Target:  5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3'
miRNA:   3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5'
26678 5' -52.6 NC_005808.1 + 776 0.66 0.766961
Target:  5'- -cUUGCCGGUcagaucgggccGCUGCgcaaucgccguCAGCAGGUgGCu -3'
miRNA:   3'- gaAACGGCCG-----------UGAUG-----------GUUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 17278 0.66 0.766961
Target:  5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3'
miRNA:   3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9319 0.66 0.766961
Target:  5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3'
miRNA:   3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.