miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 26223 1.13 0.000646
Target:  5'- gCUUUGCCGGCACUACCAACAAGCCGCa -3'
miRNA:   3'- -GAAACGGCCGUGAUGGUUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 23759 0.82 0.103101
Target:  5'- --aUGCCGGCGCcaccggGCCGAUgcGCCGCg -3'
miRNA:   3'- gaaACGGCCGUGa-----UGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 30315 0.81 0.109374
Target:  5'- ---aGCCGGCACgcuggGCCAGCAAcCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGa----UGGUUGUUcGGCG- -5'
26678 5' -52.6 NC_005808.1 + 5074 0.81 0.123008
Target:  5'- -gUUGUCGGCAUUGCCGACc-GCUGCa -3'
miRNA:   3'- gaAACGGCCGUGAUGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 32539 0.78 0.178854
Target:  5'- --aUGCCGGCcaggauGCUGCCGccgGCGAuGCCGCu -3'
miRNA:   3'- gaaACGGCCG------UGAUGGU---UGUU-CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 28523 0.78 0.178854
Target:  5'- --cUGCCGGCGCUGCUuguugaacGGCAcgaccuugcGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUGAUGG--------UUGU---------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 23311 0.77 0.217489
Target:  5'- ---gGCCGGCACUgGCCGGgAugacgugguAGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGA-UGGUUgU---------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 38521 0.77 0.222945
Target:  5'- ---gGCCGGCcugaugGCUACCAAUccccccuGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCG------UGAUGGUUG-------UUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 41129 0.77 0.223558
Target:  5'- ----cCCGGC-CUGCCAGgAGGCCGCc -3'
miRNA:   3'- gaaacGGCCGuGAUGGUUgUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 27679 0.76 0.249286
Target:  5'- ---aGUCGGCACUugaggccgGCCAGCAGcagaucGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGA--------UGGUUGUU------CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 29864 0.76 0.249286
Target:  5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3'
miRNA:   3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 4018 0.75 0.27015
Target:  5'- ---cGCCGGC-C-ACCAGCGucauGCCGCg -3'
miRNA:   3'- gaaaCGGCCGuGaUGGUUGUu---CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 27452 0.75 0.277411
Target:  5'- ---gGCCcuGGCGCUgguauGCCAGCGcGCCGCg -3'
miRNA:   3'- gaaaCGG--CCGUGA-----UGGUUGUuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 4805 0.75 0.280359
Target:  5'- ---gGCUGGCGCUGCgggauugcuggccggCGACAGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUGAUG---------------GUUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8527 0.75 0.284827
Target:  5'- ---cGCCGGCGaacUUGCCcagguaucGCAGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU---GAUGGu-------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 22829 0.75 0.292398
Target:  5'- aCUUcGCC-GCGCUGCCGAC-AGCCGa -3'
miRNA:   3'- -GAAaCGGcCGUGAUGGUUGuUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 22396 0.75 0.295471
Target:  5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3'
miRNA:   3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 11583 0.75 0.300126
Target:  5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3'
miRNA:   3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 40229 0.74 0.308011
Target:  5'- ---cGCgGGCGuCUGCCAcguGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGU-GAUGGU---UGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 30637 0.74 0.311209
Target:  5'- ---aGCCGGCGCgaaugagggcgcagACCAAUucgucGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGa-------------UGGUUG-----UUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.