Results 1 - 20 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26678 | 5' | -52.6 | NC_005808.1 | + | 18966 | 0.66 | 0.791957 |
Target: 5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3' miRNA: 3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 4667 | 0.66 | 0.787859 |
Target: 5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3' miRNA: 3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 21324 | 0.66 | 0.787859 |
Target: 5'- gCUggGCCGaCACUuacGCCGACAuGCUGg -3' miRNA: 3'- -GAaaCGGCcGUGA---UGGUUGUuCGGCg -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 13300 | 0.66 | 0.787859 |
Target: 5'- --gUGCUgGGCAaggGCCAGCAGuucGUCGCc -3' miRNA: 3'- gaaACGG-CCGUga-UGGUUGUU---CGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 27985 | 0.66 | 0.787859 |
Target: 5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3' miRNA: 3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 13210 | 0.66 | 0.787859 |
Target: 5'- --cUGCUGGC-CUACCGcgcCGAGuCCGa -3' miRNA: 3'- gaaACGGCCGuGAUGGUu--GUUC-GGCg -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 9688 | 0.66 | 0.777492 |
Target: 5'- ---aGCCGuGCAg-GCCGu--GGCCGCa -3' miRNA: 3'- gaaaCGGC-CGUgaUGGUuguUCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 24136 | 0.66 | 0.777492 |
Target: 5'- ---gGCCGaCGCcGCCGGC--GCCGCg -3' miRNA: 3'- gaaaCGGCcGUGaUGGUUGuuCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 33910 | 0.66 | 0.777492 |
Target: 5'- ---gGCCaGUAC-ACCAACGccgaGGUCGCg -3' miRNA: 3'- gaaaCGGcCGUGaUGGUUGU----UCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 23183 | 0.66 | 0.777492 |
Target: 5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3' miRNA: 3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 33603 | 0.66 | 0.777492 |
Target: 5'- ----uCCGGCACgGCCAccGCuGGCgGCa -3' miRNA: 3'- gaaacGGCCGUGaUGGU--UGuUCGgCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 14845 | 0.66 | 0.777492 |
Target: 5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3' miRNA: 3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 42080 | 0.66 | 0.777492 |
Target: 5'- ---gGCCGaaCAgaACCGccuGCAAGCCGCc -3' miRNA: 3'- gaaaCGGCc-GUgaUGGU---UGUUCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 20279 | 0.66 | 0.777492 |
Target: 5'- ---cGCguuCGGCACgGCCAGCAGcaucguGCUGCc -3' miRNA: 3'- gaaaCG---GCCGUGaUGGUUGUU------CGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 34949 | 0.66 | 0.776446 |
Target: 5'- --gUGUaCGGCAaggaGCCGGCGugggucgAGCCGCg -3' miRNA: 3'- gaaACG-GCCGUga--UGGUUGU-------UCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 776 | 0.66 | 0.766961 |
Target: 5'- -cUUGCCGGUcagaucgggccGCUGCgcaaucgccguCAGCAGGUgGCu -3' miRNA: 3'- gaAACGGCCG-----------UGAUG-----------GUUGUUCGgCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 37965 | 0.66 | 0.766961 |
Target: 5'- -cUUGCCGacccugcggcaGCGCggGCCAACAuuGGCCugGCu -3' miRNA: 3'- gaAACGGC-----------CGUGa-UGGUUGU--UCGG--CG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 33911 | 0.66 | 0.766961 |
Target: 5'- --cUGCgCGGCGCacACCugggcgcGCAgcAGCCGCu -3' miRNA: 3'- gaaACG-GCCGUGa-UGGu------UGU--UCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 4695 | 0.66 | 0.766961 |
Target: 5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3' miRNA: 3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 17278 | 0.66 | 0.766961 |
Target: 5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3' miRNA: 3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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