Results 21 - 40 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26678 | 5' | -52.6 | NC_005808.1 | + | 27247 | 0.66 | 0.753046 |
Target: 5'- ---aGCCGGCGCcccaggcucuugGCCGagGCAAugaaccgcaguucGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGa-----------UGGU--UGUU-------------CGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 23183 | 0.66 | 0.777492 |
Target: 5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3' miRNA: 3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 4695 | 0.66 | 0.766961 |
Target: 5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3' miRNA: 3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 33911 | 0.66 | 0.766961 |
Target: 5'- --cUGCgCGGCGCacACCugggcgcGCAgcAGCCGCu -3' miRNA: 3'- gaaACG-GCCGUGa-UGGu------UGU--UCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 1181 | 0.66 | 0.755202 |
Target: 5'- ---aGCCGuaucGCGCUGCCGugAAuuucuacGCCGUc -3' miRNA: 3'- gaaaCGGC----CGUGAUGGUugUU-------CGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 14845 | 0.66 | 0.777492 |
Target: 5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3' miRNA: 3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 17278 | 0.66 | 0.766961 |
Target: 5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3' miRNA: 3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 776 | 0.66 | 0.766961 |
Target: 5'- -cUUGCCGGUcagaucgggccGCUGCgcaaucgccguCAGCAGGUgGCu -3' miRNA: 3'- gaAACGGCCG-----------UGAUG-----------GUUGUUCGgCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 9319 | 0.66 | 0.766961 |
Target: 5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3' miRNA: 3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 13210 | 0.66 | 0.787859 |
Target: 5'- --cUGCUGGC-CUACCGcgcCGAGuCCGa -3' miRNA: 3'- gaaACGGCCGuGAUGGUu--GUUC-GGCg -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 33603 | 0.66 | 0.777492 |
Target: 5'- ----uCCGGCACgGCCAccGCuGGCgGCa -3' miRNA: 3'- gaaacGGCCGUGaUGGU--UGuUCGgCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 19591 | 0.66 | 0.745457 |
Target: 5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3' miRNA: 3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 4667 | 0.66 | 0.787859 |
Target: 5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3' miRNA: 3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 42080 | 0.66 | 0.777492 |
Target: 5'- ---gGCCGaaCAgaACCGccuGCAAGCCGCc -3' miRNA: 3'- gaaaCGGCc-GUgaUGGU---UGUUCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 8295 | 0.67 | 0.701051 |
Target: 5'- --cUGCCGGgGCagugcaGCCAGCGGuGCgCGCu -3' miRNA: 3'- gaaACGGCCgUGa-----UGGUUGUU-CG-GCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 30287 | 0.67 | 0.723452 |
Target: 5'- ---cGCCGGaaaACgucggguagcGCCccuGCGAGCCGCu -3' miRNA: 3'- gaaaCGGCCg--UGa---------UGGu--UGUUCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 40460 | 0.67 | 0.689734 |
Target: 5'- ---cGgCGGCGCgguugACCGGCu-GCUGCa -3' miRNA: 3'- gaaaCgGCCGUGa----UGGUUGuuCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 19945 | 0.67 | 0.723452 |
Target: 5'- -cUUGUCGGCcguggacagGCaACCcagguuucgGGCAGGCCGCc -3' miRNA: 3'- gaAACGGCCG---------UGaUGG---------UUGUUCGGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 19801 | 0.67 | 0.701051 |
Target: 5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3' miRNA: 3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5' |
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26678 | 5' | -52.6 | NC_005808.1 | + | 3885 | 0.67 | 0.734511 |
Target: 5'- ---gGCC-GCGCUGCCGuc--GCCGCc -3' miRNA: 3'- gaaaCGGcCGUGAUGGUuguuCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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