miRNA display CGI


Results 21 - 40 of 206 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 27247 0.66 0.753046
Target:  5'- ---aGCCGGCGCcccaggcucuugGCCGagGCAAugaaccgcaguucGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa-----------UGGU--UGUU-------------CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 23183 0.66 0.777492
Target:  5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3'
miRNA:   3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 4695 0.66 0.766961
Target:  5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3'
miRNA:   3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5'
26678 5' -52.6 NC_005808.1 + 33911 0.66 0.766961
Target:  5'- --cUGCgCGGCGCacACCugggcgcGCAgcAGCCGCu -3'
miRNA:   3'- gaaACG-GCCGUGa-UGGu------UGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 1181 0.66 0.755202
Target:  5'- ---aGCCGuaucGCGCUGCCGugAAuuucuacGCCGUc -3'
miRNA:   3'- gaaaCGGC----CGUGAUGGUugUU-------CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 14845 0.66 0.777492
Target:  5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3'
miRNA:   3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5'
26678 5' -52.6 NC_005808.1 + 17278 0.66 0.766961
Target:  5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3'
miRNA:   3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 776 0.66 0.766961
Target:  5'- -cUUGCCGGUcagaucgggccGCUGCgcaaucgccguCAGCAGGUgGCu -3'
miRNA:   3'- gaAACGGCCG-----------UGAUG-----------GUUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 9319 0.66 0.766961
Target:  5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3'
miRNA:   3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 13210 0.66 0.787859
Target:  5'- --cUGCUGGC-CUACCGcgcCGAGuCCGa -3'
miRNA:   3'- gaaACGGCCGuGAUGGUu--GUUC-GGCg -5'
26678 5' -52.6 NC_005808.1 + 33603 0.66 0.777492
Target:  5'- ----uCCGGCACgGCCAccGCuGGCgGCa -3'
miRNA:   3'- gaaacGGCCGUGaUGGU--UGuUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 19591 0.66 0.745457
Target:  5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 4667 0.66 0.787859
Target:  5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3'
miRNA:   3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5'
26678 5' -52.6 NC_005808.1 + 42080 0.66 0.777492
Target:  5'- ---gGCCGaaCAgaACCGccuGCAAGCCGCc -3'
miRNA:   3'- gaaaCGGCc-GUgaUGGU---UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8295 0.67 0.701051
Target:  5'- --cUGCCGGgGCagugcaGCCAGCGGuGCgCGCu -3'
miRNA:   3'- gaaACGGCCgUGa-----UGGUUGUU-CG-GCG- -5'
26678 5' -52.6 NC_005808.1 + 30287 0.67 0.723452
Target:  5'- ---cGCCGGaaaACgucggguagcGCCccuGCGAGCCGCu -3'
miRNA:   3'- gaaaCGGCCg--UGa---------UGGu--UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 40460 0.67 0.689734
Target:  5'- ---cGgCGGCGCgguugACCGGCu-GCUGCa -3'
miRNA:   3'- gaaaCgGCCGUGa----UGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 19945 0.67 0.723452
Target:  5'- -cUUGUCGGCcguggacagGCaACCcagguuucgGGCAGGCCGCc -3'
miRNA:   3'- gaAACGGCCG---------UGaUGG---------UUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 19801 0.67 0.701051
Target:  5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3'
miRNA:   3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5'
26678 5' -52.6 NC_005808.1 + 3885 0.67 0.734511
Target:  5'- ---gGCC-GCGCUGCCGuc--GCCGCc -3'
miRNA:   3'- gaaaCGGcCGUGAUGGUuguuCGGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.