miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 16519 0.72 0.434644
Target:  5'- --gUGCCGGUGgUcuggccgauauaGCCGuACAGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgA------------UGGU-UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 23759 0.82 0.103101
Target:  5'- --aUGCCGGCGCcaccggGCCGAUgcGCCGCg -3'
miRNA:   3'- gaaACGGCCGUGa-----UGGUUGuuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 32539 0.78 0.178854
Target:  5'- --aUGCCGGCcaggauGCUGCCGccgGCGAuGCCGCu -3'
miRNA:   3'- gaaACGGCCG------UGAUGGU---UGUU-CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 28523 0.78 0.178854
Target:  5'- --cUGCCGGCGCUGCUuguugaacGGCAcgaccuugcGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUGAUGG--------UUGU---------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 23311 0.77 0.217489
Target:  5'- ---gGCCGGCACUgGCCGGgAugacgugguAGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGA-UGGUUgU---------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 38521 0.77 0.222945
Target:  5'- ---gGCCGGCcugaugGCUACCAAUccccccuGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCG------UGAUGGUUG-------UUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 4018 0.75 0.27015
Target:  5'- ---cGCCGGC-C-ACCAGCGucauGCCGCg -3'
miRNA:   3'- gaaaCGGCCGuGaUGGUUGUu---CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 27452 0.75 0.277411
Target:  5'- ---gGCCcuGGCGCUgguauGCCAGCGcGCCGCg -3'
miRNA:   3'- gaaaCGG--CCGUGA-----UGGUUGUuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 4805 0.75 0.280359
Target:  5'- ---gGCUGGCGCUGCgggauugcuggccggCGACAGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUGAUG---------------GUUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8527 0.75 0.284827
Target:  5'- ---cGCCGGCGaacUUGCCcagguaucGCAGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU---GAUGGu-------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 22829 0.75 0.292398
Target:  5'- aCUUcGCC-GCGCUGCCGAC-AGCCGa -3'
miRNA:   3'- -GAAaCGGcCGUGAUGGUUGuUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 30637 0.74 0.311209
Target:  5'- ---aGCCGGCGCgaaugagggcgcagACCAAUucgucGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGa-------------UGGUUG-----UUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8997 0.74 0.323425
Target:  5'- ---cGCCgcgcgggGGCGCUuCCAGCAGGCgGCg -3'
miRNA:   3'- gaaaCGG-------CCGUGAuGGUUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 657 0.73 0.349793
Target:  5'- --gUGCCcaaGGCugUaGCCAcCAGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGugA-UGGUuGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16939 0.73 0.395454
Target:  5'- ---gGCaCGGCGCcguCCAGCAGcguGCCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGau-GGUUGUU---CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 21120 0.73 0.395454
Target:  5'- -cUUGCUGGUaucgacGCUGcCCAGCuuGGCCGCc -3'
miRNA:   3'- gaAACGGCCG------UGAU-GGUUGu-UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 12564 0.72 0.404072
Target:  5'- -cUUGCCGGCcucgcGCUGCgCGGCGaugaaauAGCCGUc -3'
miRNA:   3'- gaAACGGCCG-----UGAUG-GUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 39852 0.72 0.404072
Target:  5'- ---gGUCGGCACgcCCGAgcagcgcCGGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGauGGUU-------GUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 5014 0.72 0.405036
Target:  5'- -aUUGuuGGCAUUACCGACua-CUGCg -3'
miRNA:   3'- gaAACggCCGUGAUGGUUGuucGGCG- -5'
26678 5' -52.6 NC_005808.1 + 18279 0.72 0.434644
Target:  5'- -cUUGCCGGC-Cgu-CAGCGGGCCGg -3'
miRNA:   3'- gaAACGGCCGuGaugGUUGUUCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.