miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 22829 0.75 0.292398
Target:  5'- aCUUcGCC-GCGCUGCCGAC-AGCCGa -3'
miRNA:   3'- -GAAaCGGcCGUGAUGGUUGuUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 30637 0.74 0.311209
Target:  5'- ---aGCCGGCGCgaaugagggcgcagACCAAUucgucGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGa-------------UGGUUG-----UUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8997 0.74 0.323425
Target:  5'- ---cGCCgcgcgggGGCGCUuCCAGCAGGCgGCg -3'
miRNA:   3'- gaaaCGG-------CCGUGAuGGUUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 657 0.73 0.349793
Target:  5'- --gUGCCcaaGGCugUaGCCAcCAGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGugA-UGGUuGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16939 0.73 0.395454
Target:  5'- ---gGCaCGGCGCcguCCAGCAGcguGCCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGau-GGUUGUU---CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 21120 0.73 0.395454
Target:  5'- -cUUGCUGGUaucgacGCUGcCCAGCuuGGCCGCc -3'
miRNA:   3'- gaAACGGCCG------UGAU-GGUUGu-UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 12564 0.72 0.404072
Target:  5'- -cUUGCCGGCcucgcGCUGCgCGGCGaugaaauAGCCGUc -3'
miRNA:   3'- gaAACGGCCG-----UGAUG-GUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 39852 0.72 0.404072
Target:  5'- ---gGUCGGCACgcCCGAgcagcgcCGGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGauGGUU-------GUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 5014 0.72 0.405036
Target:  5'- -aUUGuuGGCAUUACCGACua-CUGCg -3'
miRNA:   3'- gaAACggCCGUGAUGGUUGuucGGCG- -5'
26678 5' -52.6 NC_005808.1 + 16519 0.72 0.434644
Target:  5'- --gUGCCGGUGgUcuggccgauauaGCCGuACAGGCCGCc -3'
miRNA:   3'- gaaACGGCCGUgA------------UGGU-UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 18279 0.72 0.434644
Target:  5'- -cUUGCCGGC-Cgu-CAGCGGGCCGg -3'
miRNA:   3'- gaAACGGCCGuGaugGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 24203 0.72 0.443768
Target:  5'- ---aGCacguaGGCGCUGCCAaaguccgGCGAGCgGCc -3'
miRNA:   3'- gaaaCGg----CCGUGAUGGU-------UGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 32330 0.71 0.455064
Target:  5'- ---gGCCGGCGuc-CCGACAAccGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgauGGUUGUU--CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 18365 0.71 0.475992
Target:  5'- gUUUGCCGGCGgcgagguuggccUUGCCGAUGGcGCCGg -3'
miRNA:   3'- gAAACGGCCGU------------GAUGGUUGUU-CGGCg -5'
26678 5' -52.6 NC_005808.1 + 28668 0.71 0.486634
Target:  5'- --gUGCCGGCGgcCUcGCCAGCGcGGCgCGCc -3'
miRNA:   3'- gaaACGGCCGU--GA-UGGUUGU-UCG-GCG- -5'
26678 5' -52.6 NC_005808.1 + 39763 0.71 0.497387
Target:  5'- --gUGCUGGCGCcGCUGcGCGuGGCCGCg -3'
miRNA:   3'- gaaACGGCCGUGaUGGU-UGU-UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 4260 0.7 0.518103
Target:  5'- --gUGCCGGC-CgucagcGCCGGCAuggugauGGCCGUg -3'
miRNA:   3'- gaaACGGCCGuGa-----UGGUUGU-------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 21736 0.7 0.518103
Target:  5'- --aUGCCaccguugGGCGCgGCCGcguccacauaggACAGGCCGCc -3'
miRNA:   3'- gaaACGG-------CCGUGaUGGU------------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8808 0.7 0.526929
Target:  5'- ---cGCCGGuCAgUACCGaucugcugggucggGCcAGCCGCa -3'
miRNA:   3'- gaaaCGGCC-GUgAUGGU--------------UGuUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 32820 0.7 0.530253
Target:  5'- --cUGCCGGUcggACUAC--ACcAGCCGCa -3'
miRNA:   3'- gaaACGGCCG---UGAUGguUGuUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.