miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 8947 0.71 0.475992
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8997 0.74 0.323425
Target:  5'- ---cGCCgcgcgggGGCGCUuCCAGCAGGCgGCg -3'
miRNA:   3'- gaaaCGG-------CCGUGAuGGUUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 9012 0.71 0.475992
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9060 0.71 0.475992
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9104 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9152 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9200 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9248 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9296 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9319 0.66 0.766961
Target:  5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3'
miRNA:   3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 9344 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9378 0.67 0.712295
Target:  5'- ---gGCCGcguGCAUUgugcaGCCAcugcaugucgcGCAGGCCGCg -3'
miRNA:   3'- gaaaCGGC---CGUGA-----UGGU-----------UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9392 0.67 0.712295
Target:  5'- ---gGCCGuGcCGCgauaGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaaCGGC-C-GUGa---UGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9688 0.66 0.777492
Target:  5'- ---aGCCGuGCAg-GCCGu--GGCCGCa -3'
miRNA:   3'- gaaaCGGC-CGUgaUGGUuguUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9888 0.67 0.689734
Target:  5'- uCUcgGCCaGGCGCgugGCgAuguCGAGCUGCa -3'
miRNA:   3'- -GAaaCGG-CCGUGa--UGgUu--GUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 10075 0.7 0.552599
Target:  5'- ---gGCCGGCAUcACCAGCcugcacGGgCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUUGu-----UCgGCG- -5'
26678 5' -52.6 NC_005808.1 + 10523 0.66 0.745457
Target:  5'- --gUGuuGGCGggGCCGAUGAGCaugGCg -3'
miRNA:   3'- gaaACggCCGUgaUGGUUGUUCGg--CG- -5'
26678 5' -52.6 NC_005808.1 + 11428 0.69 0.58661
Target:  5'- ---aGCCGGCguGCaggucGCCGAUAAGgCGCg -3'
miRNA:   3'- gaaaCGGCCG--UGa----UGGUUGUUCgGCG- -5'
26678 5' -52.6 NC_005808.1 + 11516 0.67 0.734511
Target:  5'- ---cGCCuGCGCUGgCGugAGGCCcuGCg -3'
miRNA:   3'- gaaaCGGcCGUGAUgGUugUUCGG--CG- -5'
26678 5' -52.6 NC_005808.1 + 11583 0.75 0.300126
Target:  5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3'
miRNA:   3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.