miRNA display CGI


Results 21 - 40 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26678 5' -52.6 NC_005808.1 + 26223 1.13 0.000646
Target:  5'- gCUUUGCCGGCACUACCAACAAGCCGCa -3'
miRNA:   3'- -GAAACGGCCGUGAUGGUUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 17060 0.7 0.541387
Target:  5'- ---gGCUacgggGGCGCUGCCGGCG-GCgGCa -3'
miRNA:   3'- gaaaCGG-----CCGUGAUGGUUGUuCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 28454 0.7 0.530253
Target:  5'- ---cGCUGGaACgGCCGgaagGCAAGCCGCu -3'
miRNA:   3'- gaaaCGGCCgUGaUGGU----UGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 30822 0.71 0.465467
Target:  5'- ---gGUCGGCACcauucUGCCGGCAAauccGCUGCa -3'
miRNA:   3'- gaaaCGGCCGUG-----AUGGUUGUU----CGGCG- -5'
26678 5' -52.6 NC_005808.1 + 18331 0.73 0.395454
Target:  5'- --cUGuCCGGCGCcacGCUcaagguGGCAAGCCGCg -3'
miRNA:   3'- gaaAC-GGCCGUGa--UGG------UUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 18690 0.69 0.575219
Target:  5'- --aUGCCGGCAUggaaGCC-GCGGGCguggCGCa -3'
miRNA:   3'- gaaACGGCCGUGa---UGGuUGUUCG----GCG- -5'
26678 5' -52.6 NC_005808.1 + 10075 0.7 0.552599
Target:  5'- ---gGCCGGCAUcACCAGCcugcacGGgCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUUGu-----UCgGCG- -5'
26678 5' -52.6 NC_005808.1 + 17968 0.74 0.341123
Target:  5'- ---cGCCGGCAC-GCCAugugguucgACGuGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGaUGGU---------UGUuCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 9060 0.71 0.475992
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 8947 0.71 0.475992
Target:  5'- --gUGCCGGauucGCCAGCGguGGCCGUg -3'
miRNA:   3'- gaaACGGCCgugaUGGUUGU--UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 11583 0.75 0.300126
Target:  5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3'
miRNA:   3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 22396 0.75 0.295471
Target:  5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3'
miRNA:   3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 37530 0.69 0.596898
Target:  5'- ---gGUCGGCAaUGCCGACAacaucaaugcagcGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-------------UCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 41549 0.69 0.58661
Target:  5'- ---cGCCGGUucgcggcgacauGCUGCCG-CcGGCCGUg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUGGUuGuUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 4040 0.7 0.519204
Target:  5'- ---aGCCGGcCGCggcgAgCGGCAGGCCaGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa---UgGUUGUUCGG-CG- -5'
26678 5' -52.6 NC_005808.1 + 25963 0.72 0.411831
Target:  5'- ---gGCCGGCACcugcACCAACAaccucuucaccaacGGCgGCg -3'
miRNA:   3'- gaaaCGGCCGUGa---UGGUUGU--------------UCGgCG- -5'
26678 5' -52.6 NC_005808.1 + 41868 0.73 0.395454
Target:  5'- ---gGCCGGCGUUGUCGGCaAAGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGAUGGUUG-UUCGGCG- -5'
26678 5' -52.6 NC_005808.1 + 29864 0.76 0.249286
Target:  5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3'
miRNA:   3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5'
26678 5' -52.6 NC_005808.1 + 36219 0.71 0.465467
Target:  5'- ---gGCCGGCcugcgccugAUUGCCGACGugGGCCGg -3'
miRNA:   3'- gaaaCGGCCG---------UGAUGGUUGU--UCGGCg -5'
26678 5' -52.6 NC_005808.1 + 16965 0.71 0.486634
Target:  5'- --cUGCCGagguggacGCGCUGCUGGCGAccgcGCCGCc -3'
miRNA:   3'- gaaACGGC--------CGUGAUGGUUGUU----CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.