miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26681 5' -61.6 NC_005808.1 + 16142 0.69 0.194939
Target:  5'- aGGACUGCgGCCGCacgcugaugguggUGGGCGUuACCGc -3'
miRNA:   3'- aCUUGACG-CGGCGg------------ACCCGCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 16450 0.67 0.26832
Target:  5'- uUGAACacgGCGUCGUagaucggGGGCGUGACgGa -3'
miRNA:   3'- -ACUUGa--CGCGGCGga-----CCCGCGCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 16812 0.66 0.318824
Target:  5'- cGAGC-GCGCCGCgCgcauCGCGGCCAu -3'
miRNA:   3'- aCUUGaCGCGGCG-GacccGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 16989 0.68 0.221013
Target:  5'- -cGACcGCGCCGCCgugguugccacugccUGGGCcGCaGACCGc -3'
miRNA:   3'- acUUGaCGCGGCGG---------------ACCCG-CG-CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 17289 0.66 0.296347
Target:  5'- cGaAGCcgGCGCCGC--GGGCGCGcauCCAu -3'
miRNA:   3'- aC-UUGa-CGCGGCGgaCCCGCGCu--GGU- -5'
26681 5' -61.6 NC_005808.1 + 17520 0.68 0.224474
Target:  5'- cGGGC-GCGCUGCgCUGGGUgGCGAUg- -3'
miRNA:   3'- aCUUGaCGCGGCG-GACCCG-CGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 17927 0.67 0.26832
Target:  5'- gUGGACgugGC-CCGCggcGGGCGCGACa- -3'
miRNA:   3'- -ACUUGa--CGcGGCGga-CCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 18077 0.73 0.10844
Target:  5'- cGuGCUGgGCCGCCgaagccGGCGCGaACCAg -3'
miRNA:   3'- aCuUGACgCGGCGGac----CCGCGC-UGGU- -5'
26681 5' -61.6 NC_005808.1 + 19070 0.72 0.117842
Target:  5'- cGAccGCgUGCGCCGCCUGgaaGGCGCGcucgcggaacuGCCGc -3'
miRNA:   3'- aCU--UG-ACGCGGCGGAC---CCGCGC-----------UGGU- -5'
26681 5' -61.6 NC_005808.1 + 19482 0.66 0.303699
Target:  5'- gGAGCcguuaccGCuGUCGCCgUGGGCGCcGCCGu -3'
miRNA:   3'- aCUUGa------CG-CGGCGG-ACCCGCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 20159 0.7 0.177186
Target:  5'- cGAACUGgacgagucCGCCGCCgucaaGGCGUGGCUg -3'
miRNA:   3'- aCUUGAC--------GCGGCGGac---CCGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 20757 0.66 0.318824
Target:  5'- aGAggcGCUGCGCCGCgCUcgacucaucGCGCGGCUg -3'
miRNA:   3'- aCU---UGACGCGGCG-GAcc-------CGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 21171 0.69 0.181968
Target:  5'- -cAACaGCGCgGCCUGcuGCGCGGCCu -3'
miRNA:   3'- acUUGaCGCGgCGGACc-CGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 21722 0.67 0.255128
Target:  5'- cGAAC-GCGguacggaUGCCaccguUGGGCGCGGCCGc -3'
miRNA:   3'- aCUUGaCGCg------GCGG-----ACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 23668 0.68 0.236343
Target:  5'- cGAACUGaCGaaaaaCGCCagcgcGGGCGcCGACCu -3'
miRNA:   3'- aCUUGAC-GCg----GCGGa----CCCGC-GCUGGu -5'
26681 5' -61.6 NC_005808.1 + 25757 0.68 0.248734
Target:  5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3'
miRNA:   3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 25786 1.08 0.000187
Target:  5'- gUGAACUGCGCCGCCUGGGCGCGACCAa -3'
miRNA:   3'- -ACUUGACGCGGCGGACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 26833 0.67 0.26832
Target:  5'- -aGGCUGCGCCGCCccgaUGGaGCG-GGCgAa -3'
miRNA:   3'- acUUGACGCGGCGG----ACC-CGCgCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 27863 0.66 0.311192
Target:  5'- --uGCUGCGCguacUGCCUGGG-GCuACCGg -3'
miRNA:   3'- acuUGACGCG----GCGGACCCgCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 28812 0.7 0.167956
Target:  5'- uUGAGCagccagcGCGCCGUCgucGGGuUGCGGCCGg -3'
miRNA:   3'- -ACUUGa------CGCGGCGGa--CCC-GCGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.