Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26681 | 5' | -61.6 | NC_005808.1 | + | 32909 | 0.68 | 0.215347 |
Target: 5'- aGAACUGCgGCCacgGCCUGcacGGCggcuguucggccaggGCGACCAc -3' miRNA: 3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 34193 | 0.68 | 0.218164 |
Target: 5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3' miRNA: 3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 33954 | 0.68 | 0.230344 |
Target: 5'- cGAguACgGCGCgGCCUGGG-GCGuuuCCGa -3' miRNA: 3'- aCU--UGaCGCGgCGGACCCgCGCu--GGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 34046 | 0.68 | 0.230344 |
Target: 5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3' miRNA: 3'- acuUGACGcGGCGGac-CCGCGCUGGu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 15705 | 0.68 | 0.236343 |
Target: 5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3' miRNA: 3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 25757 | 0.68 | 0.248734 |
Target: 5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3' miRNA: 3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 5028 | 0.67 | 0.254482 |
Target: 5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3' miRNA: 3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 21722 | 0.67 | 0.255128 |
Target: 5'- cGAAC-GCGguacggaUGCCaccguUGGGCGCGGCCGc -3' miRNA: 3'- aCUUGaCGCg------GCGG-----ACCCGCGCUGGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 16989 | 0.68 | 0.221013 |
Target: 5'- -cGACcGCGCCGCCgugguugccacugccUGGGCcGCaGACCGc -3' miRNA: 3'- acUUGaCGCGGCGG---------------ACCCG-CG-CUGGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 17520 | 0.68 | 0.224474 |
Target: 5'- cGGGC-GCGCUGCgCUGGGUgGCGAUg- -3' miRNA: 3'- aCUUGaCGCGGCG-GACCCG-CGCUGgu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 14900 | 0.68 | 0.230344 |
Target: 5'- cGAGC--CGCUGCC-GGcGCGCGGCCu -3' miRNA: 3'- aCUUGacGCGGCGGaCC-CGCGCUGGu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 23668 | 0.68 | 0.236343 |
Target: 5'- cGAACUGaCGaaaaaCGCCagcgcGGGCGcCGACCu -3' miRNA: 3'- aCUUGAC-GCg----GCGGa----CCCGC-GCUGGu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 10227 | 0.68 | 0.241854 |
Target: 5'- --uGCUGgGCgGCCgGGGCcucggcgGCGACCGc -3' miRNA: 3'- acuUGACgCGgCGGaCCCG-------CGCUGGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 8730 | 0.67 | 0.261656 |
Target: 5'- aGAugUGC-CCGgC-GGGCGCGGCg- -3' miRNA: 3'- aCUugACGcGGCgGaCCCGCGCUGgu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 17927 | 0.67 | 0.26832 |
Target: 5'- gUGGACgugGC-CCGCggcGGGCGCGACa- -3' miRNA: 3'- -ACUUGa--CGcGGCGga-CCCGCGCUGgu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 15331 | 0.67 | 0.279962 |
Target: 5'- cGAACUGCgguucauugccucgGCCaagaGCCUgGGGCGcCGGCUg -3' miRNA: 3'- aCUUGACG--------------CGG----CGGA-CCCGC-GCUGGu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 13128 | 0.67 | 0.289848 |
Target: 5'- gGAACUGgccgcgcgcuucguCGCCuggugccaggagcaCCUGGGCGCGACg- -3' miRNA: 3'- aCUUGAC--------------GCGGc-------------GGACCCGCGCUGgu -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 19482 | 0.66 | 0.303699 |
Target: 5'- gGAGCcguuaccGCuGUCGCCgUGGGCGCcGCCGu -3' miRNA: 3'- aCUUGa------CG-CGGCGG-ACCCGCGcUGGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 27863 | 0.66 | 0.311192 |
Target: 5'- --uGCUGCGCguacUGCCUGGG-GCuACCGg -3' miRNA: 3'- acuUGACGCG----GCGGACCCgCGcUGGU- -5' |
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26681 | 5' | -61.6 | NC_005808.1 | + | 14466 | 0.66 | 0.318824 |
Target: 5'- -aAGCUGCuGCCGCCcgaccaGGcguaccGCGUGACCAc -3' miRNA: 3'- acUUGACG-CGGCGGa-----CC------CGCGCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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