miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26681 5' -61.6 NC_005808.1 + 38143 0.66 0.296347
Target:  5'- gGAACUGgaagaagcCGCaCGCCUGGcGguguUGCGGCCGg -3'
miRNA:   3'- aCUUGAC--------GCG-GCGGACC-C----GCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 21722 0.67 0.255128
Target:  5'- cGAAC-GCGguacggaUGCCaccguUGGGCGCGGCCGc -3'
miRNA:   3'- aCUUGaCGCg------GCGG-----ACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 16450 0.67 0.26832
Target:  5'- uUGAACacgGCGUCGUagaucggGGGCGUGACgGa -3'
miRNA:   3'- -ACUUGa--CGCGGCGga-----CCCGCGCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 29657 0.67 0.26832
Target:  5'- aUGAGgUaGcCGuuGCCcagcaGGGCGCGGCCGu -3'
miRNA:   3'- -ACUUgA-C-GCggCGGa----CCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 26833 0.67 0.26832
Target:  5'- -aGGCUGCGCCGCCccgaUGGaGCG-GGCgAa -3'
miRNA:   3'- acUUGACGCGGCGG----ACC-CGCgCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 13540 0.67 0.27512
Target:  5'- cGAACUGUcgGCCGCCUGacucGGUGC--CCAc -3'
miRNA:   3'- aCUUGACG--CGGCGGAC----CCGCGcuGGU- -5'
26681 5' -61.6 NC_005808.1 + 10801 0.67 0.282057
Target:  5'- aUGuACUGCuG-CGCCUcGGCGCGGCUg -3'
miRNA:   3'- -ACuUGACG-CgGCGGAcCCGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 33911 0.67 0.282057
Target:  5'- cUGcGCgGCGCaCaCCUGGGCGCGcagcaGCCGc -3'
miRNA:   3'- -ACuUGaCGCG-GcGGACCCGCGC-----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 37600 0.67 0.284871
Target:  5'- cGGACUGCGCCGaCCUGcuguuCGCcaacgucauggaacuGACCAg -3'
miRNA:   3'- aCUUGACGCGGC-GGACcc---GCG---------------CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 5028 0.67 0.254482
Target:  5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3'
miRNA:   3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 25757 0.68 0.248734
Target:  5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3'
miRNA:   3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 15705 0.68 0.236343
Target:  5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3'
miRNA:   3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5'
26681 5' -61.6 NC_005808.1 + 38887 0.71 0.142804
Target:  5'- aUGAGCggaUGCGCCGCaugGGGCaGCGcgucGCCGg -3'
miRNA:   3'- -ACUUG---ACGCGGCGga-CCCG-CGC----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 28812 0.7 0.167956
Target:  5'- uUGAGCagccagcGCGCCGUCgucGGGuUGCGGCCGg -3'
miRNA:   3'- -ACUUGa------CGCGGCGGa--CCC-GCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 21171 0.69 0.181968
Target:  5'- -cAACaGCGCgGCCUGcuGCGCGGCCu -3'
miRNA:   3'- acUUGaCGCGgCGGACc-CGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 16142 0.69 0.194939
Target:  5'- aGGACUGCgGCCGCacgcugaugguggUGGGCGUuACCGc -3'
miRNA:   3'- aCUUGACG-CGGCGg------------ACCCGCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 32909 0.68 0.215347
Target:  5'- aGAACUGCgGCCacgGCCUGcacGGCggcuguucggccaggGCGACCAc -3'
miRNA:   3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 34193 0.68 0.218164
Target:  5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3'
miRNA:   3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 33954 0.68 0.230344
Target:  5'- cGAguACgGCGCgGCCUGGG-GCGuuuCCGa -3'
miRNA:   3'- aCU--UGaCGCGgCGGACCCgCGCu--GGU- -5'
26681 5' -61.6 NC_005808.1 + 34046 0.68 0.230344
Target:  5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3'
miRNA:   3'- acuUGACGcGGCGGac-CCGCGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.