miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26681 5' -61.6 NC_005808.1 + 25786 1.08 0.000187
Target:  5'- gUGAACUGCGCCGCCUGGGCGCGACCAa -3'
miRNA:   3'- -ACUUGACGCGGCGGACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 13002 0.8 0.029183
Target:  5'- gGAcaACUGgcaaacCGCgCGCCUGGGCGCGGCCGa -3'
miRNA:   3'- aCU--UGAC------GCG-GCGGACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 33362 0.76 0.058281
Target:  5'- gUGAACUGgaacUGCCGCC-GGGCGCG-CCGc -3'
miRNA:   3'- -ACUUGAC----GCGGCGGaCCCGCGCuGGU- -5'
26681 5' -61.6 NC_005808.1 + 29849 0.75 0.065324
Target:  5'- gGAGC-GCGCCaagcGUCUGGGCGCGGCa- -3'
miRNA:   3'- aCUUGaCGCGG----CGGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 15165 0.75 0.071138
Target:  5'- aGGGcCUGCgGCCGCC-GGGCGCGgugcGCCAg -3'
miRNA:   3'- aCUU-GACG-CGGCGGaCCCGCGC----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 14406 0.75 0.077448
Target:  5'- cUGGACaagGCGCCGCaccugCUGGGCGUGGgCAa -3'
miRNA:   3'- -ACUUGa--CGCGGCG-----GACCCGCGCUgGU- -5'
26681 5' -61.6 NC_005808.1 + 18077 0.73 0.10844
Target:  5'- cGuGCUGgGCCGCCgaagccGGCGCGaACCAg -3'
miRNA:   3'- aCuUGACgCGGCGGac----CCGCGC-UGGU- -5'
26681 5' -61.6 NC_005808.1 + 2736 0.72 0.114626
Target:  5'- uUGAGCgcggcccgGCGCUGCUcGGGCGUgccGACCAc -3'
miRNA:   3'- -ACUUGa-------CGCGGCGGaCCCGCG---CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 19070 0.72 0.117842
Target:  5'- cGAccGCgUGCGCCGCCUGgaaGGCGCGcucgcggaacuGCCGc -3'
miRNA:   3'- aCU--UG-ACGCGGCGGAC---CCGCGC-----------UGGU- -5'
26681 5' -61.6 NC_005808.1 + 8679 0.71 0.138963
Target:  5'- cGGcuGCUGCGCCGCCcaGGuGUGCG-CCGc -3'
miRNA:   3'- aCU--UGACGCGGCGGa-CC-CGCGCuGGU- -5'
26681 5' -61.6 NC_005808.1 + 38887 0.71 0.142804
Target:  5'- aUGAGCggaUGCGCCGCaugGGGCaGCGcgucGCCGg -3'
miRNA:   3'- -ACUUG---ACGCGGCGga-CCCG-CGC----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 33585 0.7 0.156602
Target:  5'- cGAACuggUGCGCCGCCUGcuggaagcgcccccGCGCGGCgAg -3'
miRNA:   3'- aCUUG---ACGCGGCGGACc-------------CGCGCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 28812 0.7 0.167956
Target:  5'- uUGAGCagccagcGCGCCGUCgucGGGuUGCGGCCGg -3'
miRNA:   3'- -ACUUGa------CGCGGCGGa--CCC-GCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 20159 0.7 0.177186
Target:  5'- cGAACUGgacgagucCGCCGCCgucaaGGCGUGGCUg -3'
miRNA:   3'- aCUUGAC--------GCGGCGGac---CCGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 7025 0.7 0.177186
Target:  5'- aUGGGCguuUGUGCCGCCUGuugcagcaGGCGCauGGCCu -3'
miRNA:   3'- -ACUUG---ACGCGGCGGAC--------CCGCG--CUGGu -5'
26681 5' -61.6 NC_005808.1 + 21171 0.69 0.181968
Target:  5'- -cAACaGCGCgGCCUGcuGCGCGGCCu -3'
miRNA:   3'- acUUGaCGCGgCGGACc-CGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 16142 0.69 0.194939
Target:  5'- aGGACUGCgGCCGCacgcugaugguggUGGGCGUuACCGc -3'
miRNA:   3'- aCUUGACG-CGGCGg------------ACCCGCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 29930 0.68 0.213115
Target:  5'- cGAcAC-GCGCCGCgcaugaUGGGCGaCGACCc -3'
miRNA:   3'- aCU-UGaCGCGGCGg-----ACCCGC-GCUGGu -5'
26681 5' -61.6 NC_005808.1 + 32909 0.68 0.215347
Target:  5'- aGAACUGCgGCCacgGCCUGcacGGCggcuguucggccaggGCGACCAc -3'
miRNA:   3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 34193 0.68 0.218164
Target:  5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3'
miRNA:   3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.