miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26681 5' -61.6 NC_005808.1 + 17289 0.66 0.296347
Target:  5'- cGaAGCcgGCGCCGC--GGGCGCGcauCCAu -3'
miRNA:   3'- aC-UUGa-CGCGGCGgaCCCGCGCu--GGU- -5'
26681 5' -61.6 NC_005808.1 + 34371 0.66 0.318824
Target:  5'- -aAGCUGCugacgGCCGCCgaccaGCGCGACUAc -3'
miRNA:   3'- acUUGACG-----CGGCGGacc--CGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 14466 0.66 0.318824
Target:  5'- -aAGCUGCuGCCGCCcgaccaGGcguaccGCGUGACCAc -3'
miRNA:   3'- acUUGACG-CGGCGGa-----CC------CGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 27863 0.66 0.311192
Target:  5'- --uGCUGCGCguacUGCCUGGG-GCuACCGg -3'
miRNA:   3'- acuUGACGCG----GCGGACCCgCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 38143 0.66 0.296347
Target:  5'- gGAACUGgaagaagcCGCaCGCCUGGcGguguUGCGGCCGg -3'
miRNA:   3'- aCUUGAC--------GCG-GCGGACC-C----GCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 16812 0.66 0.318824
Target:  5'- cGAGC-GCGCCGCgCgcauCGCGGCCAu -3'
miRNA:   3'- aCUUGaCGCGGCG-GacccGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 15939 0.66 0.326595
Target:  5'- cGAuagGCUGCGgCGCCUucGCGUaGGCCAg -3'
miRNA:   3'- aCU---UGACGCgGCGGAccCGCG-CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 1916 0.66 0.326595
Target:  5'- aGGACuUGCGCagcaGCUugUGGGUG-GGCCAu -3'
miRNA:   3'- aCUUG-ACGCGg---CGG--ACCCGCgCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 19482 0.66 0.303699
Target:  5'- gGAGCcguuaccGCuGUCGCCgUGGGCGCcGCCGu -3'
miRNA:   3'- aCUUGa------CG-CGGCGG-ACCCGCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 20757 0.66 0.318824
Target:  5'- aGAggcGCUGCGCCGCgCUcgacucaucGCGCGGCUg -3'
miRNA:   3'- aCU---UGACGCGGCG-GAcc-------CGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 39762 0.66 0.303699
Target:  5'- gGuGCUgGCGCCGCUgc-GCGUGGCCGc -3'
miRNA:   3'- aCuUGA-CGCGGCGGaccCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 13148 0.66 0.308929
Target:  5'- cUGcAACUGCGCCucgaugucgGCCagugucggccgcgcUGGGCGCccuuGGCCGg -3'
miRNA:   3'- -AC-UUGACGCGG---------CGG--------------ACCCGCG----CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 11267 0.66 0.311192
Target:  5'- uUGcGCUGCGgCG-CUGGGaCGCucGGCCAg -3'
miRNA:   3'- -ACuUGACGCgGCgGACCC-GCG--CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 37600 0.67 0.284871
Target:  5'- cGGACUGCGCCGaCCUGcuguuCGCcaacgucauggaacuGACCAg -3'
miRNA:   3'- aCUUGACGCGGC-GGACcc---GCG---------------CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 33911 0.67 0.282057
Target:  5'- cUGcGCgGCGCaCaCCUGGGCGCGcagcaGCCGc -3'
miRNA:   3'- -ACuUGaCGCG-GcGGACCCGCGC-----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 29657 0.67 0.26832
Target:  5'- aUGAGgUaGcCGuuGCCcagcaGGGCGCGGCCGu -3'
miRNA:   3'- -ACUUgA-C-GCggCGGa----CCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 16450 0.67 0.26832
Target:  5'- uUGAACacgGCGUCGUagaucggGGGCGUGACgGa -3'
miRNA:   3'- -ACUUGa--CGCGGCGga-----CCCGCGCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 21722 0.67 0.255128
Target:  5'- cGAAC-GCGguacggaUGCCaccguUGGGCGCGGCCGc -3'
miRNA:   3'- aCUUGaCGCg------GCGG-----ACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 5028 0.67 0.254482
Target:  5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3'
miRNA:   3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 15331 0.67 0.279962
Target:  5'- cGAACUGCgguucauugccucgGCCaagaGCCUgGGGCGcCGGCUg -3'
miRNA:   3'- aCUUGACG--------------CGG----CGGA-CCCGC-GCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.