miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26681 5' -61.6 NC_005808.1 + 20159 0.7 0.177186
Target:  5'- cGAACUGgacgagucCGCCGCCgucaaGGCGUGGCUg -3'
miRNA:   3'- aCUUGAC--------GCGGCGGac---CCGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 16812 0.66 0.318824
Target:  5'- cGAGC-GCGCCGCgCgcauCGCGGCCAu -3'
miRNA:   3'- aCUUGaCGCGGCG-GacccGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 15331 0.67 0.279962
Target:  5'- cGAACUGCgguucauugccucgGCCaagaGCCUgGGGCGcCGGCUg -3'
miRNA:   3'- aCUUGACG--------------CGG----CGGA-CCCGC-GCUGGu -5'
26681 5' -61.6 NC_005808.1 + 27863 0.66 0.311192
Target:  5'- --uGCUGCGCguacUGCCUGGG-GCuACCGg -3'
miRNA:   3'- acuUGACGCG----GCGGACCCgCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 19482 0.66 0.303699
Target:  5'- gGAGCcguuaccGCuGUCGCCgUGGGCGCcGCCGu -3'
miRNA:   3'- aCUUGa------CG-CGGCGG-ACCCGCGcUGGU- -5'
26681 5' -61.6 NC_005808.1 + 13128 0.67 0.289848
Target:  5'- gGAACUGgccgcgcgcuucguCGCCuggugccaggagcaCCUGGGCGCGACg- -3'
miRNA:   3'- aCUUGAC--------------GCGGc-------------GGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 14466 0.66 0.318824
Target:  5'- -aAGCUGCuGCCGCCcgaccaGGcguaccGCGUGACCAc -3'
miRNA:   3'- acUUGACG-CGGCGGa-----CC------CGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 41288 0.68 0.218732
Target:  5'- cGGcCUGguggcCGUCGcCCUGGGCGCGGCg- -3'
miRNA:   3'- aCUuGAC-----GCGGC-GGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 29930 0.68 0.213115
Target:  5'- cGAcAC-GCGCCGCgcaugaUGGGCGaCGACCc -3'
miRNA:   3'- aCU-UGaCGCGGCGg-----ACCCGC-GCUGGu -5'
26681 5' -61.6 NC_005808.1 + 7025 0.7 0.177186
Target:  5'- aUGGGCguuUGUGCCGCCUGuugcagcaGGCGCauGGCCu -3'
miRNA:   3'- -ACUUG---ACGCGGCGGAC--------CCGCG--CUGGu -5'
26681 5' -61.6 NC_005808.1 + 16989 0.68 0.221013
Target:  5'- -cGACcGCGCCGCCgugguugccacugccUGGGCcGCaGACCGc -3'
miRNA:   3'- acUUGaCGCGGCGG---------------ACCCG-CG-CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 33585 0.7 0.156602
Target:  5'- cGAACuggUGCGCCGCCUGcuggaagcgcccccGCGCGGCgAg -3'
miRNA:   3'- aCUUG---ACGCGGCGGACc-------------CGCGCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 8679 0.71 0.138963
Target:  5'- cGGcuGCUGCGCCGCCcaGGuGUGCG-CCGc -3'
miRNA:   3'- aCU--UGACGCGGCGGa-CC-CGCGCuGGU- -5'
26681 5' -61.6 NC_005808.1 + 19070 0.72 0.117842
Target:  5'- cGAccGCgUGCGCCGCCUGgaaGGCGCGcucgcggaacuGCCGc -3'
miRNA:   3'- aCU--UG-ACGCGGCGGAC---CCGCGC-----------UGGU- -5'
26681 5' -61.6 NC_005808.1 + 2736 0.72 0.114626
Target:  5'- uUGAGCgcggcccgGCGCUGCUcGGGCGUgccGACCAc -3'
miRNA:   3'- -ACUUGa-------CGCGGCGGaCCCGCG---CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 14406 0.75 0.077448
Target:  5'- cUGGACaagGCGCCGCaccugCUGGGCGUGGgCAa -3'
miRNA:   3'- -ACUUGa--CGCGGCG-----GACCCGCGCUgGU- -5'
26681 5' -61.6 NC_005808.1 + 15165 0.75 0.071138
Target:  5'- aGGGcCUGCgGCCGCC-GGGCGCGgugcGCCAg -3'
miRNA:   3'- aCUU-GACG-CGGCGGaCCCGCGC----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 29849 0.75 0.065324
Target:  5'- gGAGC-GCGCCaagcGUCUGGGCGCGGCa- -3'
miRNA:   3'- aCUUGaCGCGG----CGGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 33362 0.76 0.058281
Target:  5'- gUGAACUGgaacUGCCGCC-GGGCGCG-CCGc -3'
miRNA:   3'- -ACUUGAC----GCGGCGGaCCCGCGCuGGU- -5'
26681 5' -61.6 NC_005808.1 + 13002 0.8 0.029183
Target:  5'- gGAcaACUGgcaaacCGCgCGCCUGGGCGCGGCCGa -3'
miRNA:   3'- aCU--UGAC------GCG-GCGGACCCGCGCUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.