miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26681 5' -61.6 NC_005808.1 + 25786 1.08 0.000187
Target:  5'- gUGAACUGCGCCGCCUGGGCGCGACCAa -3'
miRNA:   3'- -ACUUGACGCGGCGGACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 23668 0.68 0.236343
Target:  5'- cGAACUGaCGaaaaaCGCCagcgcGGGCGcCGACCu -3'
miRNA:   3'- aCUUGAC-GCg----GCGGa----CCCGC-GCUGGu -5'
26681 5' -61.6 NC_005808.1 + 8730 0.67 0.261656
Target:  5'- aGAugUGC-CCGgC-GGGCGCGGCg- -3'
miRNA:   3'- aCUugACGcGGCgGaCCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 34371 0.66 0.318824
Target:  5'- -aAGCUGCugacgGCCGCCgaccaGCGCGACUAc -3'
miRNA:   3'- acUUGACG-----CGGCGGacc--CGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 15165 0.75 0.071138
Target:  5'- aGGGcCUGCgGCCGCC-GGGCGCGgugcGCCAg -3'
miRNA:   3'- aCUU-GACG-CGGCGGaCCCGCGC----UGGU- -5'
26681 5' -61.6 NC_005808.1 + 14406 0.75 0.077448
Target:  5'- cUGGACaagGCGCCGCaccugCUGGGCGUGGgCAa -3'
miRNA:   3'- -ACUUGa--CGCGGCG-----GACCCGCGCUgGU- -5'
26681 5' -61.6 NC_005808.1 + 19070 0.72 0.117842
Target:  5'- cGAccGCgUGCGCCGCCUGgaaGGCGCGcucgcggaacuGCCGc -3'
miRNA:   3'- aCU--UG-ACGCGGCGGAC---CCGCGC-----------UGGU- -5'
26681 5' -61.6 NC_005808.1 + 8679 0.71 0.138963
Target:  5'- cGGcuGCUGCGCCGCCcaGGuGUGCG-CCGc -3'
miRNA:   3'- aCU--UGACGCGGCGGa-CC-CGCGCuGGU- -5'
26681 5' -61.6 NC_005808.1 + 7025 0.7 0.177186
Target:  5'- aUGGGCguuUGUGCCGCCUGuugcagcaGGCGCauGGCCu -3'
miRNA:   3'- -ACUUG---ACGCGGCGGAC--------CCGCG--CUGGu -5'
26681 5' -61.6 NC_005808.1 + 14900 0.68 0.230344
Target:  5'- cGAGC--CGCUGCC-GGcGCGCGGCCu -3'
miRNA:   3'- aCUUGacGCGGCGGaCC-CGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 41288 0.68 0.218732
Target:  5'- cGGcCUGguggcCGUCGcCCUGGGCGCGGCg- -3'
miRNA:   3'- aCUuGAC-----GCGGC-GGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 20159 0.7 0.177186
Target:  5'- cGAACUGgacgagucCGCCGCCgucaaGGCGUGGCUg -3'
miRNA:   3'- aCUUGAC--------GCGGCGGac---CCGCGCUGGu -5'
26681 5' -61.6 NC_005808.1 + 13002 0.8 0.029183
Target:  5'- gGAcaACUGgcaaacCGCgCGCCUGGGCGCGGCCGa -3'
miRNA:   3'- aCU--UGAC------GCG-GCGGACCCGCGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 16989 0.68 0.221013
Target:  5'- -cGACcGCGCCGCCgugguugccacugccUGGGCcGCaGACCGc -3'
miRNA:   3'- acUUGaCGCGGCGG---------------ACCCG-CG-CUGGU- -5'
26681 5' -61.6 NC_005808.1 + 33362 0.76 0.058281
Target:  5'- gUGAACUGgaacUGCCGCC-GGGCGCG-CCGc -3'
miRNA:   3'- -ACUUGAC----GCGGCGGaCCCGCGCuGGU- -5'
26681 5' -61.6 NC_005808.1 + 33585 0.7 0.156602
Target:  5'- cGAACuggUGCGCCGCCUGcuggaagcgcccccGCGCGGCgAg -3'
miRNA:   3'- aCUUG---ACGCGGCGGACc-------------CGCGCUGgU- -5'
26681 5' -61.6 NC_005808.1 + 17520 0.68 0.224474
Target:  5'- cGGGC-GCGCUGCgCUGGGUgGCGAUg- -3'
miRNA:   3'- aCUUGaCGCGGCG-GACCCG-CGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 10227 0.68 0.241854
Target:  5'- --uGCUGgGCgGCCgGGGCcucggcgGCGACCGc -3'
miRNA:   3'- acuUGACgCGgCGGaCCCG-------CGCUGGU- -5'
26681 5' -61.6 NC_005808.1 + 29849 0.75 0.065324
Target:  5'- gGAGC-GCGCCaagcGUCUGGGCGCGGCa- -3'
miRNA:   3'- aCUUGaCGCGG----CGGACCCGCGCUGgu -5'
26681 5' -61.6 NC_005808.1 + 2736 0.72 0.114626
Target:  5'- uUGAGCgcggcccgGCGCUGCUcGGGCGUgccGACCAc -3'
miRNA:   3'- -ACUUGa-------CGCGGCGGaCCCGCG---CUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.