miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 3' -56.1 NC_005808.1 + 1468 0.66 0.578861
Target:  5'- gGUCGgcggccuccuggcAGGCCGGgguaucgcagugcugGUCgGACAugGCGCc -3'
miRNA:   3'- -UAGC-------------UCCGGCCa--------------UAG-CUGUugCGCGu -5'
26683 3' -56.1 NC_005808.1 + 2818 0.72 0.257581
Target:  5'- cGUCG-GGCCaGGUGcucgCGGCcACGCGCAg -3'
miRNA:   3'- -UAGCuCCGG-CCAUa---GCUGuUGCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 4557 0.68 0.431413
Target:  5'- cUUGAGGCCGaaGUCGcCGAgGCGCu -3'
miRNA:   3'- uAGCUCCGGCcaUAGCuGUUgCGCGu -5'
26683 3' -56.1 NC_005808.1 + 5223 0.65 0.607827
Target:  5'- cGUCGAGGauguuggacgccaCGGUGUUGACGuugGCGUugGCAc -3'
miRNA:   3'- -UAGCUCCg------------GCCAUAGCUGU---UGCG--CGU- -5'
26683 3' -56.1 NC_005808.1 + 5249 0.7 0.332274
Target:  5'- uUCGgccggcAGGUCGGgGUCGGCAAUGCGUc -3'
miRNA:   3'- uAGC------UCCGGCCaUAGCUGUUGCGCGu -5'
26683 3' -56.1 NC_005808.1 + 5311 0.71 0.308307
Target:  5'- gGUCGAGGCC-GUAggccgCGAgcaCGugGCGCAg -3'
miRNA:   3'- -UAGCUCCGGcCAUa----GCU---GUugCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 5451 0.78 0.106307
Target:  5'- -gCGAGGUCGGUAUCGACcaucACGcCGCGg -3'
miRNA:   3'- uaGCUCCGGCCAUAGCUGu---UGC-GCGU- -5'
26683 3' -56.1 NC_005808.1 + 5553 0.68 0.471517
Target:  5'- gGUCGcccGCCacGGUAUCGACGGCGC-CAa -3'
miRNA:   3'- -UAGCuc-CGG--CCAUAGCUGUUGCGcGU- -5'
26683 3' -56.1 NC_005808.1 + 5575 0.69 0.415938
Target:  5'- uGUCGAGGCCGGcauacuccacgaauuUGgcccacUCGGCGGgGUGCGu -3'
miRNA:   3'- -UAGCUCCGGCC---------------AU------AGCUGUUgCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 6177 0.68 0.470491
Target:  5'- -gCGcAGGCCGGUcuugccgcagcGUuugcaggUGACGGCGCGCGg -3'
miRNA:   3'- uaGC-UCCGGCCA-----------UA-------GCUGUUGCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 7826 0.67 0.492266
Target:  5'- gGUCGAGGCgCGGcugcaCGAUGACcagGCGCAc -3'
miRNA:   3'- -UAGCUCCG-GCCaua--GCUGUUG---CGCGU- -5'
26683 3' -56.1 NC_005808.1 + 8124 0.68 0.431413
Target:  5'- -gCGcGGCCGGcguugGUUGugGGCGUGCGg -3'
miRNA:   3'- uaGCuCCGGCCa----UAGCugUUGCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 9163 0.67 0.513426
Target:  5'- cUUGAgGGCCGGcagCGACAACuugGCGCc -3'
miRNA:   3'- uAGCU-CCGGCCauaGCUGUUG---CGCGu -5'
26683 3' -56.1 NC_005808.1 + 9775 0.7 0.340562
Target:  5'- cGUUGcGGCUGGUGUaguccgacCGGCAgACGCGCAg -3'
miRNA:   3'- -UAGCuCCGGCCAUA--------GCUGU-UGCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 10482 0.67 0.502797
Target:  5'- cGUCGAGGUCGGcagCGGcCAGgGCGUu -3'
miRNA:   3'- -UAGCUCCGGCCauaGCU-GUUgCGCGu -5'
26683 3' -56.1 NC_005808.1 + 13160 0.67 0.492266
Target:  5'- cUCGAugucGGCCaGUGUCGGC--CGCGCu -3'
miRNA:   3'- uAGCU----CCGGcCAUAGCUGuuGCGCGu -5'
26683 3' -56.1 NC_005808.1 + 14767 0.66 0.578861
Target:  5'- -gCGcGGCCGGcgccaccgCgGGCAGCGCGCGc -3'
miRNA:   3'- uaGCuCCGGCCaua-----G-CUGUUGCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 15255 0.66 0.555682
Target:  5'- -gCGAGGUCGGcc-CGgccuacguggaaaGCAACGCGCGc -3'
miRNA:   3'- uaGCUCCGGCCauaGC-------------UGUUGCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 16351 0.71 0.300616
Target:  5'- -gCGGGuGCCcGUGccuUCGGCGACGCGCGc -3'
miRNA:   3'- uaGCUC-CGGcCAU---AGCUGUUGCGCGU- -5'
26683 3' -56.1 NC_005808.1 + 16900 0.67 0.524145
Target:  5'- -gCGGGGCUGGUAUgaGCAGCGuUGCc -3'
miRNA:   3'- uaGCUCCGGCCAUAgcUGUUGC-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.